Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 7.9e-55 216.9 109 100.0
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 7.9e-55 216.9 109 100.0
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 7.9e-55 216.9 109 100.0
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 2.3e-54 215.3 109 99.1
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 1.4e-51 206.1 107 94.4
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 3.1e-51 204.9 107 94.4
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 4.1e-51 204.5 107 94.4
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 4.1e-51 204.5 107 93.5
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 9.1e-51 203.4 107 93.5
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 1.2e-50 203.0 107 94.4
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 1.2e-50 203.0 107 92.5
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 2.0e-50 202.2 107 92.5
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 2.2e-49 198.7 107 91.6
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 1.1e-48 196.4 107 90.7
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 1.2e-47 193.0 107 86.9
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 1.6e-47 192.6 101 94.1
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 2.6e-42 175.3 100 84.0
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 1.7e-41 172.6 104 78.8
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 3.2e-40 168.3 100 81.0
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 5.5e-40 167.5 102 78.4
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 5.5e-40 167.5 103 77.7
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 5.5e-40 167.5 103 77.7
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 5.5e-40 167.5 103 77.7
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 7.2e-40 167.2 100 79.0
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 9.4e-40 166.8 103 76.7
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 1.2e-39 166.4 102 76.5
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 1.6e-39 166.0 104 76.0
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 1.6e-39 166.0 105 77.1
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 2.1e-39 165.6 109 76.1
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 2.7e-39 165.2 100 80.0
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 6.1e-39 164.1 100 81.0
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 6.1e-39 164.1 103 75.7
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 1.4e-38 162.9 100 77.0
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 1.8e-38 162.5 103 75.7
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 2.3e-38 162.2 100 77.0
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 3.0e-38 161.8 105 75.2
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 4.0e-38 161.4 102 72.5
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 6.7e-38 160.6 103 76.7
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 6.7e-38 160.6 101 77.2
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 6.7e-38 160.6 101 77.2
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 8.8e-38 160.2 102 76.5
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 1.2e-37 159.8 99 76.8
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 1.5e-37 159.5 102 73.5
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 3.3e-37 158.3 102 74.5
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 4.4e-37 157.9 103 72.8
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 4.4e-37 157.9 104 75.0
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 5.7e-37 157.5 96 78.1
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 7.5e-37 157.1 101 77.2
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 7.5e-37 157.1 101 77.2
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 9.7e-37 156.8 102 71.6
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 1.3e-36 156.4 102 71.6
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 1.3e-36 156.4 101 77.2
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 1.3e-36 156.4 102 75.5
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 1.7e-36 156.0 101 71.3
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 1.7e-36 156.0 96 76.0
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 2.2e-36 155.6 98 75.5
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 2.8e-36 155.2 102 72.5
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 2.8e-36 155.2 102 70.6
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 3.7e-36 154.8 101 76.2
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 3.7e-36 154.8 101 76.2
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 3.7e-36 154.8 104 73.1
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 4.8e-36 154.5 97 75.3
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 4.8e-36 154.5 97 69.1
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 4.8e-36 154.5 102 71.6
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 8.2e-36 153.7 100 74.0
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 8.2e-36 153.7 108 65.7
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 1.1e-35 153.3 92 78.3
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 1.4e-35 152.9 102 71.6
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 1.8e-35 152.5 95 74.7
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 1.8e-35 152.5 100 73.0
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 3.1e-35 151.8 96 72.9
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 3.1e-35 151.8 96 71.9
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 3.1e-35 151.8 104 74.0
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 4.1e-35 151.4 96 72.9
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 7.0e-35 150.6 103 68.9
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 1.2e-34 149.8 97 71.1
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 1.2e-34 149.8 96 71.9
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 1.2e-34 149.8 96 71.9
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 1.2e-34 149.8 99 66.7
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 4.5e-34 147.9 96 72.9
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 5.9e-34 147.5 103 70.9
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 5.9e-34 147.5 91 78.0
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 1.0e-33 146.7 102 73.5
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 1.0e-33 146.7 96 68.8
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 1.0e-33 146.7 92 76.1
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 1.3e-33 146.4 102 72.5
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 2.2e-33 145.6 101 73.3
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 6.5e-33 144.1 132 57.6
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 1.2e-29 133.3 79 82.3
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 1.5e-29 132.9 100 64.0
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 2.6e-29 132.1 146 50.7
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 7.5e-29 130.6 87 72.4
SGA_v2.0_scaffold25G10944 Striga asiatica HOM05D006748 ORTHO05D008553 1.1e-27 126.7 81 75.3
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 1.1e-27 126.7 86 69.8
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 1.1e-27 126.7 102 59.8
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 2.4e-27 125.6 95 62.1
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 4.1e-27 124.8 80 75.0
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 5.4e-27 124.4 86 72.1
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 2.0e-26 122.5 109 61.5
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 4.5e-26 121.3 87 69.0
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 1.7e-25 119.4 88 65.9
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 1.6e-23 112.8 57 93.0
ATR0064G062 Amborella trichopoda HOM05D006748 ORTHO05D008553 1.0e-22 110.2 86 64.0
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 3.0e-22 108.6 82 69.5
Sabra15G0081500 Salix brachista HOM05D006748 ORTHO05D008553 5.2e-22 107.8 85 63.5
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 1.2e-21 106.7 54 92.6
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 1.5e-21 106.3 77 70.1
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 1.3e-20 103.2 86 54.7
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 6.3e-20 100.9 69 68.1
Pp3c14_26790 Physcomitrium patens HOM05D006748 ORTHO05D008553 2.4e-19 99.0 93 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1931 Anthoceros agrestis HOM05D006748 ORTHO05D008553 5.9e-18 94.4 74 60.8
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 3.8e-17 91.7 51 84.3
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 3.0e-14 82.0 54 75.9
COL.COLO4_37587 Corchorus olitorius HOM05D006748 ORTHO05D008553 2.9e-12 75.5 53 66.0
CDE02G4382 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 9.5e-08 60.5 53 58.5
SEGI_29622 Sequoiadendron giganteum HOM05D006748 ORTHO05D008553 1.6e-07 59.7 45 60.0
MCO16G157 Micromonas commoda HOM05D006748 ORTHO05D008553 1.8e-06 56.2 88 30.7


User provided reference genes

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