Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 7.0e-78 294.3 194 100.0
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 7.0e-78 294.3 194 100.0
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 2.1e-74 282.7 188 100.0
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 2.2e-71 272.7 154 98.7
BcaB05g21613 Brassica carinata HOM05D007846 ORTHO05D093536 3.4e-32 142.5 72 95.8
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 4.9e-31 138.7 134 61.9
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 3.9e-28 129.0 160 53.8
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 3.9e-28 129.0 160 53.8
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 8.6e-28 127.9 167 50.9
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 9.5e-27 124.4 156 55.1
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 9.5e-27 124.4 156 55.1
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 9.5e-27 124.4 156 55.1
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 1.8e-25 120.2 133 59.4
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 1.5e-24 117.1 133 58.6
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 4.4e-24 115.5 157 54.8
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 1.4e-22 110.5 96 69.8
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 1.4e-22 110.5 96 69.8
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 1.1e-19 100.9 94 69.1
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 1.5e-19 100.5 98 62.2
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 5.6e-19 98.6 90 65.6
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 9.6e-19 97.8 132 50.0
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 9.6e-19 97.8 90 64.4
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 2.1e-18 96.7 89 65.2
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 2.1e-18 96.7 99 62.6
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 4.7e-18 95.5 162 45.1
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.8e-17 93.6 133 49.6
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 2.4e-17 93.2 134 50.0
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 5.2e-17 92.0 135 48.1
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 8.9e-17 91.3 133 50.4
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.5e-16 90.5 135 48.9
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 2.6e-16 89.7 86 65.1
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 2.6e-16 89.7 86 65.1
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 4.4e-16 89.0 86 61.6
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 7.6e-16 88.2 160 42.5
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 9.3e-14 81.3 99 55.6
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 9.3e-14 81.3 99 55.6
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.6e-13 80.5 158 43.0
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 6.0e-13 78.6 103 45.6
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 1.0e-12 77.8 86 60.5
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 1.0e-12 77.8 86 60.5
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 2.3e-12 76.6 86 54.7
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 3.0e-12 76.3 93 55.9
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 3.0e-12 76.3 61 77.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 8.7e-12 74.7 143 39.9
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 8.7e-12 74.7 86 52.3
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 1.5e-11 73.9 86 52.3
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 1.9e-11 73.6 86 52.3
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 2.5e-11 73.2 86 53.5
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 2.1e-10 70.1 95 48.4
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 2.1e-10 70.1 83 51.8
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 2.1e-10 70.1 79 55.7
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 4.8e-10 68.9 86 48.8
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 4.8e-10 68.9 111 43.2
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.4e-09 67.4 86 47.7
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 1.4e-09 67.4 86 48.8
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 1.4e-09 67.4 86 48.8
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 1.4e-09 67.4 79 53.2
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 1.8e-09 67.0 79 51.9
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.8e-09 67.0 76 56.6
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 2.4e-09 66.6 90 48.9
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 2.4e-09 66.6 93 51.6
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 3.1e-09 66.2 91 47.3
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 4.0e-09 65.9 107 44.9
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 5.3e-09 65.5 107 44.9
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 6.9e-09 65.1 81 46.9
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 9.0e-09 64.7 86 48.8
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 9.0e-09 64.7 86 48.8
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.5e-08 63.9 107 43.9
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 2.0e-08 63.5 79 50.6
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 2.0e-08 63.5 71 53.5
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 3.4e-08 62.8 76 51.3
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 3.4e-08 62.8 76 51.3
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 3.4e-08 62.8 76 51.3
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 3.4e-08 62.8 76 51.3
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 3.4e-08 62.8 76 51.3
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 5.8e-08 62.0 107 43.0
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 9.9e-08 61.2 84 44.0
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 1.3e-07 60.8 83 47.0
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 2.9e-07 59.7 84 42.9
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 2.9e-07 59.7 84 42.9
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 6.4e-07 58.5 84 40.5
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 6.4e-07 58.5 80 43.8
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 8.4e-07 58.2 84 42.9
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 8.4e-07 58.2 84 42.9
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 1.1e-06 57.8 84 41.7
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 1.1e-06 57.8 76 48.7
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 1.4e-06 57.4 87 40.2
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 1.4e-06 57.4 74 50.0
A03p03370 Brassica napus HOM05D000805 ORTHO05D012592 2.4e-06 56.6 65 50.8
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 2.4e-06 56.6 84 41.7
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 2.4e-06 56.6 86 44.2
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 2.4e-06 56.6 80 42.5
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 3.2e-06 56.2 87 47.1
A03p03380 Brassica napus HOM05D000805 ORTHO05D012592 3.2e-06 56.2 72 47.2
C03p03820 Brassica napus HOM05D000805 ORTHO05D012592 3.2e-06 56.2 67 50.7
BraA03t09689Z Brassica rapa HOM05D000805 ORTHO05D012592 3.2e-06 56.2 72 47.2
Os09g0324000 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 4.2e-06 55.8 57 50.9
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 7.1e-06 55.1 44 68.2
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 7.1e-06 55.1 139 36.7
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 7.1e-06 55.1 139 36.7
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 7.1e-06 55.1 44 68.2
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 9.3e-06 54.7 87 46.0
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 9.3e-06 54.7 72 47.2


User provided reference genes

Program Settings