Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.4e-298 1028.1 525 100.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-293 1012.3 525 97.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 9.1e-290 999.6 525 97.5
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.7e-283 978.8 640 81.7
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 3.7e-283 977.6 629 82.7
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-279 965.7 521 93.5
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.7e-278 961.4 522 93.7
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 3.6e-278 961.1 522 93.7
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 1.3e-272 942.6 525 91.4
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 8.0e-270 933.3 526 90.9
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.0e-253 879.8 525 85.0
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-250 869.8 526 84.8
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.6e-249 865.9 520 83.7
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 6.4e-243 844.0 526 81.9
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.1e-239 833.2 523 81.1
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.4e-229 799.7 518 80.7
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.3e-224 782.3 514 75.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.3e-221 771.2 520 73.8
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 7.1e-218 760.8 512 73.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.7e-217 758.8 515 75.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.0e-217 757.7 518 75.3
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.0e-216 755.4 520 73.8
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 3.9e-216 755.0 515 73.8
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.9e-216 755.0 512 73.6
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.1e-215 753.4 495 80.2
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 3.3e-215 751.9 520 72.3
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 4.3e-215 751.5 517 71.6
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 7.3e-215 750.7 520 71.3
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.4e-213 745.7 520 70.8
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 5.3e-213 744.6 516 71.9
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 9.0e-213 743.8 520 71.7
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.2e-212 743.4 517 71.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.5e-212 743.0 520 72.5
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.4e-212 741.9 520 71.2
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.4e-212 741.9 517 71.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.3e-211 740.0 529 70.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.2e-211 739.2 520 71.2
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.4e-210 736.5 520 70.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.6e-209 731.5 520 71.3
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 6.0e-209 731.1 520 70.4
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.9e-207 726.1 520 69.8
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.3e-206 723.4 515 69.7
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.6e-206 723.0 521 70.4
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 3.7e-206 721.8 515 69.3
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 3.7e-206 721.8 512 72.1
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.4e-205 719.9 513 70.8
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.4e-205 719.9 586 63.7
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.4e-205 719.2 498 70.5
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 4.0e-205 718.4 514 69.5
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.9e-205 717.6 513 70.6
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 9.0e-205 717.2 512 70.1
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 4.5e-204 714.9 512 70.9
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.5e-204 714.9 515 69.9
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.2e-203 712.6 515 68.2
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-202 709.5 539 66.6
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.0e-200 702.2 524 67.4
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 8.7e-200 700.7 489 74.8
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 8.2e-198 694.1 472 78.4
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 5.9e-196 688.0 481 72.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 7.2e-194 681.0 512 67.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.2e-193 680.2 472 76.9
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 4.6e-193 678.3 496 69.8
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 9.7e-191 670.6 512 66.8
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 8.2e-190 667.5 472 71.2
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 3.2e-186 655.6 520 66.2
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 5.5e-186 654.8 511 66.5
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.6e-185 653.3 521 66.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.4e-178 630.2 533 63.4
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.6e-177 626.7 522 60.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-176 624.0 444 69.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.8e-176 623.2 553 58.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.8e-176 623.2 497 66.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.0e-176 622.5 532 62.6
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.2e-174 616.3 548 61.1
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.1e-173 614.0 420 74.5
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 4.5e-172 608.6 514 61.7
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.3e-171 607.1 427 71.2
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 6.5e-171 604.7 460 68.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.7e-169 599.4 410 73.9
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.7e-167 591.7 454 66.1
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.1e-165 587.4 421 70.8
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.1e-165 587.4 501 60.3
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.1e-165 585.5 533 60.2
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.1e-165 585.5 421 70.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.0e-163 580.9 426 70.0
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.3e-163 580.5 499 61.9
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 5.2e-160 568.5 526 58.2
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.8e-158 562.8 517 55.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.3e-158 561.6 571 55.3
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.2e-156 557.4 449 64.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-156 555.8 501 58.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.2e-152 542.0 387 71.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 8.8e-152 541.2 589 52.3
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.4e-149 533.9 555 53.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 9.2e-149 531.2 501 55.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 7.7e-148 528.1 426 64.6
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.8e-144 516.9 448 58.3
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.5e-140 502.7 467 56.1
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.0e-139 498.8 459 58.4
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.0e-136 489.2 399 64.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.3e-130 469.2 424 59.9
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.1e-128 464.5 379 63.6
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.5e-122 444.1 252 89.7
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 6.4e-118 428.7 511 46.4
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 8.4e-118 428.3 397 58.7
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.4e-117 425.6 300 70.3
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 7.1e-117 425.2 292 71.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.3e-114 416.4 480 47.5
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-106 390.6 341 61.6
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 8.1e-105 385.2 517 42.9
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 3.0e-99 366.7 432 51.4
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.0e-95 354.0 291 63.9
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.9e-94 349.4 442 44.1
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-86 324.7 267 64.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.3e-86 324.7 167 97.0
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.5e-79 299.7 384 46.9
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.5e-77 292.7 217 64.5
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.6e-73 281.2 469 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.5e-69 266.2 433 38.1
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.2e-69 265.8 190 67.4
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 2.8e-65 253.8 187 67.4
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-63 248.4 218 61.0
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.2e-53 212.6 199 56.3
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.2e-52 211.8 592 28.7
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-51 207.6 189 58.7
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 2.4e-40 171.0 436 31.9
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 9.1e-40 169.1 162 57.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.3e-38 165.2 177 52.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 5.5e-37 159.8 148 52.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.3e-35 154.5 97 78.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.5e-34 151.8 122 58.2
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-29 134.4 151 45.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.5e-29 134.4 151 45.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.5e-29 132.5 95 74.7
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 8.0e-28 129.4 96 61.5
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 8.9e-27 125.9 544 27.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 4.4e-26 123.6 95 66.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.3e-25 122.1 86 68.6
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.4e-24 118.6 96 58.3
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.6e-23 113.6 71 80.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.3e-22 111.3 80 57.5
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.1e-19 102.4 89 64.0
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.5e-18 98.6 62 82.3
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.5e-18 98.6 62 82.3
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.4e-18 97.4 67 71.6
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.4e-16 90.1 102 46.1
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 7.0e-16 89.7 56 78.6
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 9.5e-13 79.3 62 62.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.6e-12 77.4 50 76.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 8.1e-12 76.3 73 57.5
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-10 72.0 37 91.9
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.0e-10 71.6 54 57.4
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.7e-09 67.4 189 30.7


User provided reference genes

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