Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13086 Brassica carinata HOM05D001661 ORTHO05D040037 1.0e-54 216.5 105 100.0
C03p54210 Brassica napus HOM05D002028 ORTHO05D040037 6.7e-27 124.0 104 63.5
BraA10t43779Z Brassica rapa HOM05D000139 ORTHO05D001575 1.8e-19 99.4 49 91.8
A08p19180 Brassica napus HOM05D001661 ORTHO05D001575 5.0e-14 81.3 52 73.1
AT4G30550 Arabidopsis thaliana HOM05D001661 ORTHO05D001575 1.5e-13 79.7 50 72.0
AL7G21590 Arabidopsis lyrata HOM05D001661 ORTHO05D001575 1.9e-13 79.3 50 72.0
BraA08t33879Z Brassica rapa HOM05D001661 ORTHO05D001575 1.9e-13 79.3 52 71.2
Thhalv10026083m.g Eutrema salsugineum HOM05D001661 ORTHO05D001575 2.5e-13 79.0 50 74.0
C03p88650 Brassica napus HOM05D001661 ORTHO05D001575 4.2e-13 78.2 48 72.9
Carub.0007s1002 Capsella rubella HOM05D001661 ORTHO05D001575 4.2e-13 78.2 47 74.5
Sp7g28430 Schrenkiella parvula HOM05D001661 ORTHO05D001575 9.5e-13 77.0 50 74.0
A09p56690 Brassica napus HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
C08p39660 Brassica napus HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
BolC8t51536H Brassica oleracea HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
BraA09t41060Z Brassica rapa HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
Thhalv10000640m.g Eutrema salsugineum HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
Sp4g02880 Schrenkiella parvula HOM05D001661 ORTHO05D001575 2.7e-12 75.5 50 72.0
C03p32720 Brassica napus HOM05D001661 ORTHO05D001575 4.7e-12 74.7 50 72.0
Aa31LG2G19960 Aethionema arabicum HOM05D001661 ORTHO05D001575 1.0e-11 73.6 45 68.9
BcaC01g01147 Brassica carinata HOM05D001661 ORTHO05D001575 1.0e-11 73.6 48 70.8
BcaC07g40968 Brassica carinata HOM05D001661 ORTHO05D001575 1.0e-11 73.6 50 70.0
BolC3t15608H Brassica oleracea HOM05D001661 ORTHO05D001575 1.0e-11 73.6 50 70.0
BolC3t21171H Brassica oleracea HOM05D001661 ORTHO05D001575 1.0e-11 73.6 48 70.8
CARHR238430 Cardamine hirsuta HOM05D001661 ORTHO05D001575 1.0e-11 73.6 47 70.2
AL138U10010 Arabidopsis lyrata HOM05D001661 ORTHO05D001575 1.4e-11 73.2 50 70.0
AL4G14000 Arabidopsis lyrata HOM05D001661 ORTHO05D001575 1.4e-11 73.2 50 70.0
AT2G23970 Arabidopsis thaliana HOM05D001661 ORTHO05D001575 1.4e-11 73.2 50 70.0
CARHR184670 Cardamine hirsuta HOM05D001661 ORTHO05D001575 1.4e-11 73.2 50 68.0
Aa31LG7G12840 Aethionema arabicum HOM05D001661 ORTHO05D001575 2.3e-11 72.4 50 66.0
BcaC01g04877 Brassica carinata HOM05D001661 ORTHO05D001575 3.0e-11 72.0 50 70.0
BcaB03g12650 Brassica carinata HOM05D001661 ORTHO05D001575 4.0e-11 71.6 57 64.9
Carub.0004s0313 Capsella rubella HOM05D001661 ORTHO05D001575 5.7e-10 67.8 50 64.0
THA.LOC104803539 Tarenaya hassleriana HOM05D001661 ORTHO05D001575 5.7e-10 67.8 50 64.0
Peaxi162Scf00038g00523 Petunia axillaris HOM05D001661 ORTHO05D001575 9.8e-10 67.0 50 58.0
Carub.0007s1004 Capsella rubella HOM05D001661 ORTHO05D001575 1.3e-09 66.6 50 64.0
Nitab4.5_0001036g0030 Nicotiana tabacum HOM05D001661 ORTHO05D001575 1.7e-09 66.2 49 55.1
THA.LOC104819995 Tarenaya hassleriana HOM05D001661 ORTHO05D001575 1.7e-09 66.2 50 58.0
Sp7g28420 Schrenkiella parvula HOM05D001661 ORTHO05D001575 2.2e-09 65.9 50 64.0
BcaNung02976 Brassica carinata HOM05D001661 ORTHO05D001575 3.7e-09 65.1 50 64.0
FvH4_7g12720 Fragaria vesca HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
FAN01G0220 Fragaria x ananassa HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
FAN03G1098 Fragaria x ananassa HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
FAN06G2493 Fragaria x ananassa HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
FAN10G4029 Fragaria x ananassa HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
FAN10G4151 Fragaria x ananassa HOM05D001661 ORTHO05D001575 3.7e-09 65.1 46 56.5
Aqoxy7G03271 Aquilegia oxysepala HOM05D001661 ORTHO05D001575 4.9e-09 64.7 43 62.8
Thhalv10026067m.g Eutrema salsugineum HOM05D001661 ORTHO05D001575 4.9e-09 64.7 50 62.0
Nitab4.5_0002545g0100 Nicotiana tabacum HOM05D001661 ORTHO05D001575 4.9e-09 64.7 49 55.1
BcaB03g12649 Brassica carinata HOM05D001661 ORTHO05D001575 6.3e-09 64.3 50 62.0
Dinv42809 Davidia involucrata HOM05D001661 ORTHO05D001575 6.3e-09 64.3 44 59.1
Dinv43292 Davidia involucrata HOM05D001661 ORTHO05D001575 6.3e-09 64.3 44 59.1
Aqoxy7G03272 Aquilegia oxysepala HOM05D001661 ORTHO05D001575 8.3e-09 63.9 44 63.6
Peaxi162Scf00038g00521 Petunia axillaris HOM05D001661 ORTHO05D001575 8.3e-09 63.9 50 54.0
TWI32G1286 Tripterygium wilfordii HOM05D001661 ORTHO05D001575 8.3e-09 63.9 44 59.1
AL7G21600 Arabidopsis lyrata HOM05D001661 ORTHO05D001575 1.1e-08 63.5 50 60.0
AL7G21610 Arabidopsis lyrata HOM05D001661 ORTHO05D001575 1.1e-08 63.5 50 60.0
AT4G30530 Arabidopsis thaliana HOM05D001661 ORTHO05D001575 1.1e-08 63.5 50 60.0
Nn2g12491 Nelumbo nucifera HOM05D001661 ORTHO05D001575 1.1e-08 63.5 44 61.4
AT4G30540 Arabidopsis thaliana HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BcaC01g01148 Brassica carinata HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BcaNung00564 Brassica carinata HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
A01p07650 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 62.0
A03p59950 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
A08p19190 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
C01p08340 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 62.0
C03p88660 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
C07p58010 Brassica napus HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BolC1t00820H Brassica oleracea HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 62.0
BolC3t21172H Brassica oleracea HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BolC7t46258H Brassica oleracea HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BraA01t00708Z Brassica rapa HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 62.0
BraA03t15051Z Brassica rapa HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
BraA08t33880Z Brassica rapa HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 60.0
MD16G1259000 Malus domestica HOM05D001661 ORTHO05D001575 1.4e-08 63.2 50 54.0
Nn8g40155 Nelumbo nucifera HOM05D001661 ORTHO05D001575 1.4e-08 63.2 44 59.1
RcHm_v2.0_Chr4g0405351 Rosa chinensis HOM05D001661 ORTHO05D001575 1.4e-08 63.2 46 54.3
Actinidia38653 Actinidia chinensis HOM05D001661 ORTHO05D001575 1.8e-08 62.8 46 58.7
Aa31LG2G19980 Aethionema arabicum HOM05D001661 ORTHO05D001575 1.8e-08 62.8 50 58.0
Thhalv10027000m.g Eutrema salsugineum HOM05D001661 ORTHO05D001575 1.8e-08 62.8 50 60.0
FAN06G0881 Fragaria x ananassa HOM05D001661 ORTHO05D001575 1.8e-08 62.8 46 54.3
Rhsim01G0019600 Rhododendron simsii HOM05D001661 ORTHO05D001575 1.8e-08 62.8 44 59.1
BcaNung04572 Brassica carinata HOM05D001661 ORTHO05D001575 2.4e-08 62.4 50 60.0
Eucgr.C00233 Eucalyptus grandis HOM05D001661 ORTHO05D001575 2.4e-08 62.4 44 56.8
Peaxi162Scf00177g00112 Petunia axillaris HOM05D001661 ORTHO05D001575 2.4e-08 62.4 49 59.2
vmacro06049 Vaccinium macrocarpon HOM05D001661 ORTHO05D001575 2.4e-08 62.4 44 59.1
MSTRG.6168 Avicennia marina HOM05D001661 ORTHO05D001575 3.1e-08 62.0 44 61.4
Carub.0007s1003 Capsella rubella HOM05D001661 ORTHO05D001575 3.1e-08 62.0 50 58.0
Ciclev10009284m.g Citrus clementina HOM05D001661 ORTHO05D001575 3.1e-08 62.0 49 51.0
Nn2g12490 Nelumbo nucifera HOM05D001661 ORTHO05D001575 3.1e-08 62.0 45 53.3
Nn8g40149 Nelumbo nucifera HOM05D001661 ORTHO05D001575 3.1e-08 62.0 44 59.1
Nn8g40156 Nelumbo nucifera HOM05D001661 ORTHO05D001575 3.1e-08 62.0 44 59.1
Dinv41331 Davidia involucrata HOM05D001661 ORTHO05D001575 4.1e-08 61.6 44 56.8
Lj7C465T11 Lonicera japonica HOM05D001661 ORTHO05D001575 4.1e-08 61.6 44 56.8
Nn8g40154 Nelumbo nucifera HOM05D001661 ORTHO05D001575 5.4e-08 61.2 44 54.5
Rhsim01G0021200 Rhododendron simsii HOM05D001661 ORTHO05D001575 5.4e-08 61.2 44 56.8
vmacro13069 Vaccinium macrocarpon HOM05D001661 ORTHO05D001575 5.4e-08 61.2 46 56.5
CiPaw.15G163600 Carya illinoinensis HOM05D001661 ORTHO05D001575 7.0e-08 60.8 44 56.8
CDE02G4565 Ceratophyllum demersum HOM05D001661 ORTHO05D005142 7.0e-08 60.8 45 55.6
Dinv41332 Davidia involucrata HOM05D001661 ORTHO05D001575 7.0e-08 60.8 48 50.0
Dinv42811 Davidia involucrata HOM05D001661 ORTHO05D001575 7.0e-08 60.8 46 52.2
Dinv43290 Davidia involucrata HOM05D001661 ORTHO05D001575 7.0e-08 60.8 46 52.2
Duzib150G1288 Durio zibethinus HOM05D001661 ORTHO05D001575 7.0e-08 60.8 45 53.3
Duzib168G1456 Durio zibethinus HOM05D001661 ORTHO05D001575 7.0e-08 60.8 44 54.5
Gohir.A08G087600 Gossypium hirsutum HOM05D001661 ORTHO05D001575 7.0e-08 60.8 41 61.0
Nn8g40153 Nelumbo nucifera HOM05D001661 ORTHO05D001575 7.0e-08 60.8 44 54.5
GSVIVG01023703001 Vitis vinifera HOM05D001661 ORTHO05D001575 7.0e-08 60.8 43 55.8
Actinidia33303 Actinidia chinensis HOM05D001661 ORTHO05D001575 9.2e-08 60.5 44 56.8
CSS0003426 Camellia sinensis var. sinensis HOM05D001661 ORTHO05D001575 9.2e-08 60.5 44 54.5
Cc06_g14430 Coffea canephora HOM05D001661 ORTHO05D001575 9.2e-08 60.5 49 49.0
COL.COLO4_36567 Corchorus olitorius HOM05D001661 ORTHO05D001575 9.2e-08 60.5 45 53.3
MD13G1275500 Malus domestica HOM05D001661 ORTHO05D001575 9.2e-08 60.5 49 51.0
Manes.06G032600 Manihot esculenta HOM05D001661 ORTHO05D001575 9.2e-08 60.5 44 54.5
PGR142G2234 Punica granatum HOM05D001661 ORTHO05D001575 9.2e-08 60.5 47 53.2
CARHR238420 Cardamine hirsuta HOM05D001661 ORTHO05D001575 1.2e-07 60.1 50 58.0
AUR62025380 Chenopodium quinoa HOM05D001661 ORTHO05D001575 1.2e-07 60.1 43 58.1
Rhsim03G0259900 Rhododendron simsii HOM05D001661 ORTHO05D001575 1.2e-07 60.1 44 56.8
Rhsim03G0260000 Rhododendron simsii HOM05D001661 ORTHO05D001575 1.2e-07 60.1 44 56.8
Actinidia20940 Actinidia chinensis HOM05D001661 ORTHO05D001575 1.6e-07 59.7 44 54.5
Aa31LG7G12860 Aethionema arabicum HOM05D001661 ORTHO05D001575 1.6e-07 59.7 49 61.2
AT2G23960 Arabidopsis thaliana HOM05D001661 ORTHO05D001575 1.6e-07 59.7 50 56.0
CARHR184650 Cardamine hirsuta HOM05D001661 ORTHO05D001575 1.6e-07 59.7 50 60.0
AUR62028371 Chenopodium quinoa HOM05D001661 ORTHO05D001575 1.6e-07 59.7 43 58.1
MBI14_g16423_MAGBIO Magnolia biondii HOM05D001661 ORTHO05D001575 1.6e-07 59.7 49 46.9
Nn8g40148 Nelumbo nucifera HOM05D001661 ORTHO05D001575 1.6e-07 59.7 45 53.3
Nitab4.5_0006719g0020 Nicotiana tabacum HOM05D001661 ORTHO05D001575 1.6e-07 59.7 49 53.1
Thecc.09G154900 Theobroma cacao HOM05D001661 ORTHO05D001575 1.6e-07 59.7 44 54.5
Carub.0007s3163 Capsella rubella HOM05D001661 ORTHO05D001575 2.0e-07 59.3 50 56.0
Haze_19061 Corylus avellana HOM05D001661 ORTHO05D001575 2.0e-07 59.3 44 56.8
Gorai.004G106300 Gossypium raimondii HOM05D001661 ORTHO05D001575 2.0e-07 59.3 41 56.1
Prupe.1G101400 Prunus persica HOM05D001661 ORTHO05D001575 2.0e-07 59.3 46 52.2
BcaC07g40970 Brassica carinata HOM05D001661 ORTHO05D001575 2.7e-07 58.9 50 56.0
C08p39670 Brassica napus HOM05D001661 ORTHO05D001575 2.7e-07 58.9 50 56.0
BolC8t51537H Brassica oleracea HOM05D001661 ORTHO05D001575 2.7e-07 58.9 50 56.0
CANSAT11G0315 Cannabis sativa HOM05D001661 ORTHO05D001575 2.7e-07 58.9 44 54.5
Cfa020770 Carpinus fangiana HOM05D001661 ORTHO05D001575 2.7e-07 58.9 44 56.8
Thhalv10000299m.g Eutrema salsugineum HOM05D001661 ORTHO05D001575 2.7e-07 58.9 50 56.0
unitig_46.g18477 Utricularia gibba HOM05D001661 ORTHO05D001575 2.7e-07 58.9 46 54.3
Aa31LG2G19970 Aethionema arabicum HOM05D001661 ORTHO05D001575 3.5e-07 58.5 50 50.0
A09p56700 Brassica napus HOM05D001661 ORTHO05D001575 3.5e-07 58.5 50 56.0
BraA09t41061Z Brassica rapa HOM05D001661 ORTHO05D001575 3.5e-07 58.5 50 56.0
Eucgr.C00236 Eucalyptus grandis HOM05D001661 ORTHO05D001575 3.5e-07 58.5 44 52.3
Gohir.D08G098500 Gossypium hirsutum HOM05D001661 ORTHO05D001575 3.5e-07 58.5 41 56.1
Nn8g40145 Nelumbo nucifera HOM05D001661 ORTHO05D001575 3.5e-07 58.5 46 50.0
TAR383G0501 Trochodendron aralioides HOM05D001661 ORTHO05D001575 3.5e-07 58.5 44 54.5
TAR383G0652 Trochodendron aralioides HOM05D001661 ORTHO05D001575 3.5e-07 58.5 44 54.5
TAR383G0818 Trochodendron aralioides HOM05D001661 ORTHO05D001575 3.5e-07 58.5 44 54.5
EL10Ac8g18899 Beta vulgaris HOM05D001661 ORTHO05D001575 4.5e-07 58.2 41 56.1
Migut.J01398 Erythranthe guttata HOM05D001661 ORTHO05D001575 4.5e-07 58.2 46 52.2
HanXRQChr05g0137681 Helianthus annuus HOM05D001661 ORTHO05D001575 5.9e-07 57.8 52 50.0
QL02p094358 Quercus lobata HOM05D001661 ORTHO05D001575 5.9e-07 57.8 43 53.5
Solyc07g006090.3 Solanum lycopersicum HOM05D001661 ORTHO05D001575 5.9e-07 57.8 51 52.9
Sopen07g002200 Solanum pennellii HOM05D001661 ORTHO05D001575 5.9e-07 57.8 51 52.9
Nn2g12489 Nelumbo nucifera HOM05D001661 ORTHO05D001575 7.7e-07 57.4 40 57.5
Oeu010274.2 Olea europaea HOM05D001661 ORTHO05D001575 7.7e-07 57.4 46 50.0
Atru.chr7.389 Acer truncatum HOM05D001661 ORTHO05D001575 1.0e-06 57.0 45 51.1
Ah.09g228580 Amaranthus hybridus HOM05D001661 ORTHO05D001575 1.0e-06 57.0 41 58.5
CAN.G1190.13 Capsicum annuum HOM05D001661 ORTHO05D001575 1.0e-06 57.0 51 51.0
CiPaw.16G106100 Carya illinoinensis HOM05D001661 ORTHO05D001575 1.0e-06 57.0 44 52.3
Dinv43289 Davidia involucrata HOM05D001661 ORTHO05D001575 1.0e-06 57.0 44 50.0
THA.LOC104803534 Tarenaya hassleriana HOM05D001661 ORTHO05D001575 1.0e-06 57.0 44 59.1
CANSAT11G2207 Cannabis sativa HOM05D001661 ORTHO05D001575 1.3e-06 56.6 44 52.3
Potri.018G102000 Populus trichocarpa HOM05D001661 ORTHO05D001575 1.3e-06 56.6 44 52.3
PGSC0003DMG400011159 Solanum tuberosum HOM05D001661 ORTHO05D001575 1.3e-06 56.6 47 55.3
DCAR_017930 Daucus carota HOM05D001661 ORTHO05D001575 1.7e-06 56.2 44 52.3
THA.LOC104803921 Tarenaya hassleriana HOM05D001661 ORTHO05D001575 1.7e-06 56.2 50 58.0
unitig_37.g12752 Utricularia gibba HOM05D001661 ORTHO05D001575 1.7e-06 56.2 46 50.0
CDE02G0184 Ceratophyllum demersum HOM05D001661 ORTHO05D001575 2.3e-06 55.8 44 50.0
MBI16_g30312_MAGBIO Magnolia biondii HOM05D001661 ORTHO05D001575 2.3e-06 55.8 45 51.1
AUR62027095 Chenopodium quinoa HOM05D001661 ORTHO05D001575 2.9e-06 55.5 46 50.0
ClCG06G012710 Citrullus lanatus HOM05D001661 ORTHO05D001575 2.9e-06 55.5 43 53.5
CDE04G0547 Ceratophyllum demersum HOM05D001661 ORTHO05D001575 3.8e-06 55.1 44 56.8
Sed0003759 Sechium edule HOM05D001661 ORTHO05D001575 3.8e-06 55.1 42 57.1
Sc18g0007100 Simmondsia chinensis HOM05D001661 ORTHO05D001575 3.8e-06 55.1 47 46.8
ATR0580G401 Amborella trichopoda HOM05D001661 ORTHO05D001575 5.0e-06 54.7 49 44.9
ECA236G2311 Erigeron canadensis HOM05D001661 ORTHO05D001575 5.0e-06 54.7 52 44.2
Glyma.17G070700 Glycine max HOM05D001661 ORTHO05D001575 6.6e-06 54.3 40 52.5
Lsat_1_v5_gn_9_115821 Lactuca sativa HOM05D001661 ORTHO05D001575 6.6e-06 54.3 49 51.0


User provided reference genes

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