Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 3.2e-144 515.0 244 100.0
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 8.6e-142 506.9 247 98.0
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 3.3e-141 505.0 247 97.6
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.2e-140 503.1 247 97.2
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 4.6e-127 458.0 245 91.0
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 2.5e-117 425.6 245 84.5
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 3.6e-116 421.8 245 83.7
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 1.7e-113 412.9 245 80.8
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 2.1e-111 406.0 245 80.0
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 3.5e-111 405.2 245 80.4
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 1.5e-109 399.8 247 78.1
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.9e-109 399.4 245 80.4
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 3.0e-102 375.6 244 75.0
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 2.1e-100 369.4 243 74.1
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 3.1e-99 365.5 251 71.3
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 6.9e-99 364.4 248 71.0
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 2.0e-98 362.8 245 70.6
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 2.0e-98 362.8 243 72.4
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 3.4e-98 362.1 244 71.7
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 5.8e-98 361.3 243 71.6
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 1.3e-97 360.1 244 70.5
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 6.4e-97 357.8 247 70.0
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 8.4e-97 357.5 243 72.4
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 1.1e-96 357.1 246 70.3
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 1.4e-96 356.7 243 70.8
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 1.9e-96 356.3 243 71.6
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.4e-96 355.9 243 72.0
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 4.2e-96 355.1 248 69.0
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 4.2e-96 355.1 248 67.3
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.2e-95 353.6 245 69.0
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 1.2e-95 353.6 243 71.2
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 1.2e-95 353.6 243 70.4
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 2.1e-95 352.8 245 69.8
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 4.6e-95 351.7 243 69.5
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 4.6e-95 351.7 246 69.5
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 6.0e-95 351.3 242 69.0
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 7.9e-95 350.9 243 71.2
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 1.0e-94 350.5 243 70.4
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 1.8e-94 349.7 242 69.8
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 2.3e-94 349.4 243 70.8
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.3e-94 349.4 244 70.5
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 5.1e-94 348.2 219 72.6
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 1.1e-93 347.1 245 70.6
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 1.1e-93 347.1 277 63.9
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 1.5e-93 346.7 247 68.0
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 5.6e-93 344.7 248 67.3
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 5.6e-93 344.7 245 67.8
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 5.6e-93 344.7 253 66.0
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 1.6e-92 343.2 245 67.3
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 1.6e-92 343.2 244 67.6
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 2.8e-92 342.4 243 69.5
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 9.0e-91 337.4 247 66.4
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 1.2e-90 337.0 246 66.7
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.5e-90 336.7 242 66.9
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.5e-90 336.7 245 67.3
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 2.0e-90 336.3 249 63.1
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 3.4e-90 335.5 244 68.4
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 5.8e-90 334.7 242 65.3
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 7.6e-90 334.3 249 67.1
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 7.6e-90 334.3 243 66.3
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 7.6e-90 334.3 245 65.7
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 7.6e-90 334.3 243 65.0
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 1.0e-89 334.0 245 65.3
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 6.5e-89 331.3 243 67.5
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 7.1e-88 327.8 245 62.4
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 1.6e-87 326.6 247 64.4
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 2.7e-87 325.9 258 62.4
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.3e-86 322.8 303 56.8
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.0e-86 322.4 260 60.4
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 1.5e-85 320.1 236 65.7
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 3.3e-85 318.9 247 65.2
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 1.3e-84 317.0 203 74.9
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.8e-84 315.8 243 65.8
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 3.7e-84 315.5 245 62.4
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 6.3e-84 314.7 244 62.3
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 3.4e-82 308.9 269 59.9
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 9.4e-80 300.8 251 62.5
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.4e-78 297.0 181 79.0
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 1.4e-78 297.0 281 52.3
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 2.2e-76 289.7 300 50.7
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 2.8e-76 289.3 249 59.4
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 8.2e-76 287.7 243 59.7
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 5.3e-75 285.0 179 76.5
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 1.2e-74 283.9 252 56.7
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 6.5e-73 278.1 269 55.8
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 1.4e-72 276.9 267 53.2
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 1.4e-72 276.9 182 72.5
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 1.9e-72 276.6 194 67.5
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 1.5e-69 266.9 252 55.6
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 1.3e-68 263.8 244 55.3
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 3.7e-68 262.3 246 56.9
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 4.1e-67 258.8 178 69.7
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 1.2e-66 257.3 213 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 8.5e-65 251.1 214 57.9
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 1.4e-64 250.4 283 47.0
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 1.4e-62 243.8 292 50.0
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 4.0e-54 215.7 251 46.2
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 1.6e-50 203.8 136 72.1
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 1.2e-47 194.1 133 69.2
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 8.0e-47 191.4 209 50.2
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 4.8e-44 182.2 120 70.8
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 1.5e-24 117.5 85 67.1
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 7.3e-24 115.2 90 61.1
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 5.4e-19 99.0 87 55.2
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 1.3e-09 67.8 36 72.2
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 9.5e-08 61.6 124 29.8
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 1.4e-06 57.8 151 25.2
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 3.1e-06 56.6 127 28.3
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 3.1e-06 56.6 154 24.0
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 6.8e-06 55.5 158 27.2
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 8.9e-06 55.1 131 24.4
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 8.9e-06 55.1 185 22.7


User provided reference genes

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