Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 5.8e-36 153.7 76 100.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 5.8e-36 153.7 76 100.0
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.9e-35 151.4 76 98.7
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 2.9e-35 151.4 76 97.4
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 4.6e-33 144.1 77 93.5
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.0e-25 118.6 79 82.3
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.5e-23 112.5 72 80.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.1e-21 106.3 80 72.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.2e-20 102.8 82 72.0
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 9.9e-20 99.8 74 71.6
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 8.3e-19 96.7 73 69.9
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.1e-18 96.3 80 66.2
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 2.4e-18 95.1 76 68.4
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 7.8e-17 90.1 64 75.0
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 1.3e-16 89.4 71 71.8
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 3.9e-16 87.8 86 59.3
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 3.9e-16 87.8 86 59.3
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 8.9e-13 76.6 85 60.0
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 4.1e-10 67.8 52 61.5
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.7e-09 65.1 48 70.8
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 6.0e-09 63.9 51 66.7
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 2.3e-08 62.0 45 60.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.3e-08 62.0 55 56.4
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.0e-08 61.6 45 71.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.0e-08 61.6 45 71.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.9e-08 61.2 45 68.9
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 6.6e-08 60.5 50 60.0
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.7e-08 60.1 50 58.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.1e-07 59.7 47 61.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-07 59.7 50 56.0
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.1e-07 59.7 49 65.3
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-07 59.3 48 58.3
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-07 59.3 48 58.3
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-07 59.3 48 58.3
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.9e-07 58.9 50 60.0
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.9e-07 58.9 44 61.4
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.9e-07 58.9 56 53.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.9e-07 58.9 51 56.9
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.9e-07 58.9 51 56.9
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.5e-07 58.5 48 58.3
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.3e-07 58.2 58 53.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.3e-07 58.2 49 59.2
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.3e-07 58.2 45 62.2
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 5.6e-07 57.4 50 56.0
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 5.6e-07 57.4 48 60.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 5.6e-07 57.4 57 56.1
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 5.6e-07 57.4 50 58.0
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 5.6e-07 57.4 48 60.4
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.6e-07 57.4 50 58.0
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.3e-07 57.0 57 54.4
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 7.3e-07 57.0 49 59.2
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 7.3e-07 57.0 50 58.0
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.6e-07 56.6 50 58.0
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 9.6e-07 56.6 50 58.0
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 9.6e-07 56.6 53 52.8
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 9.6e-07 56.6 48 56.2
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.2e-06 56.2 57 50.9
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.2e-06 56.2 48 56.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.6e-06 55.8 52 57.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-06 55.8 54 55.6
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.6e-06 55.8 47 66.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.1e-06 55.5 48 58.3
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.1e-06 55.5 48 58.3
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 2.1e-06 55.5 54 55.6
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.8e-06 55.1 46 58.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.8e-06 55.1 46 58.7
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.8e-06 55.1 46 58.7
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.8e-06 55.1 50 56.0
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.8e-06 55.1 48 60.4
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.8e-06 55.1 44 63.6
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.8e-06 55.1 48 60.4
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 4.7e-06 54.3 46 54.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.7e-06 54.3 49 61.2
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 4.7e-06 54.3 48 56.2
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 4.7e-06 54.3 42 61.9
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 4.7e-06 54.3 55 52.7
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 4.7e-06 54.3 55 52.7
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 6.2e-06 53.9 53 52.8
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 8.1e-06 53.5 79 39.2
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.1e-06 53.5 46 58.7
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.1e-06 53.5 55 50.9
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.1e-06 53.5 55 50.9


User provided reference genes

Program Settings