Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 1.2e-77 293.1 147 100.0
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 1.2e-74 283.1 143 99.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 6.5e-68 260.8 145 92.4
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 2.8e-63 245.4 146 86.3
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 2.8e-63 245.4 146 86.3
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-62 243.4 146 84.9
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 1.1e-62 243.4 146 84.9
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 1.4e-62 243.0 152 84.2
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 4.5e-61 238.0 149 83.2
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 3.8e-60 235.0 151 81.5
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 6.5e-60 234.2 151 80.8
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 8.5e-60 233.8 151 80.1
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 5.5e-59 231.1 151 80.1
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.6e-58 229.6 147 81.6
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 4.6e-58 228.0 161 76.4
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 3.3e-56 221.9 148 81.8
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.4e-54 215.7 146 76.0
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 5.0e-52 208.0 147 74.1
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 5.0e-52 208.0 151 70.2
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 5.0e-52 208.0 151 70.2
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.9e-51 206.1 150 70.7
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 4.2e-51 204.9 150 70.7
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 4.2e-51 204.9 150 70.7
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 9.4e-51 203.8 151 70.2
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 1.2e-50 203.4 151 68.9
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 6.1e-50 201.1 151 69.5
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 6.1e-50 201.1 152 70.4
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 7.9e-50 200.7 144 71.5
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.4e-49 199.9 151 68.9
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.4e-49 199.9 151 68.2
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.3e-49 199.1 147 70.7
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 3.0e-49 198.7 148 70.3
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 3.0e-49 198.7 147 70.7
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.9e-49 198.4 151 67.5
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 6.7e-49 197.6 151 66.2
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 1.1e-48 196.8 147 70.7
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 1.1e-48 196.8 151 66.2
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 2.0e-48 196.1 146 70.5
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.6e-48 195.7 147 69.4
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 2.6e-48 195.7 147 69.4
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 2.6e-48 195.7 146 68.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 2.6e-48 195.7 146 67.8
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 3.3e-48 195.3 147 68.0
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 4.4e-48 194.9 147 66.7
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 4.4e-48 194.9 147 68.7
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 5.7e-48 194.5 147 66.7
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 5.7e-48 194.5 151 66.9
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 9.7e-48 193.7 146 67.1
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 9.7e-48 193.7 150 67.3
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 9.7e-48 193.7 148 67.6
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-47 193.4 147 68.0
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 1.7e-47 193.0 151 68.2
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.7e-47 193.0 147 66.7
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 2.2e-47 192.6 150 64.7
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.2e-47 192.6 151 66.2
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.8e-47 192.2 149 65.8
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 3.7e-47 191.8 146 68.5
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 3.7e-47 191.8 151 64.2
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.7e-47 191.8 151 65.6
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 4.8e-47 191.4 151 65.6
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 4.8e-47 191.4 146 67.8
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 6.3e-47 191.0 151 62.9
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 8.2e-47 190.7 151 65.6
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.1e-46 190.3 151 65.6
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-46 189.9 151 63.6
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.8e-46 189.5 146 67.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.4e-46 189.1 147 67.3
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 2.4e-46 189.1 151 64.9
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 3.1e-46 188.7 151 62.9
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.1e-46 188.7 146 67.8
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.1e-46 188.7 148 65.5
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 5.3e-46 188.0 151 64.2
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 9.1e-46 187.2 148 65.5
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 9.1e-46 187.2 146 65.1
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-45 186.8 151 62.3
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 1.2e-45 186.8 149 66.4
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.5e-45 186.4 149 63.8
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 2.0e-45 186.0 149 65.1
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 2.0e-45 186.0 146 65.1
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 2.6e-45 185.7 146 67.1
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.6e-45 185.7 147 65.3
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 3.4e-45 185.3 152 65.1
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 4.5e-45 184.9 148 62.8
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 7.7e-45 184.1 149 64.4
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 1.0e-44 183.7 147 64.6
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.7e-44 183.0 187 56.1
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 2.9e-44 182.2 148 63.5
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 5.0e-44 181.4 160 60.6
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.9e-43 179.5 136 69.9
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 3.2e-43 178.7 151 62.9
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 3.2e-43 178.7 151 62.9
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 3.2e-43 178.7 136 69.1
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.2e-43 178.7 148 63.5
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.2e-42 176.8 136 69.1
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.2e-42 176.8 151 61.6
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 1.2e-42 176.8 151 61.6
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 1.6e-42 176.4 140 64.3
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 4.7e-42 174.9 147 59.9
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.8e-41 172.9 147 61.2
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.2e-39 166.0 197 50.3
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.9e-37 157.9 119 66.4
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.9e-37 157.9 119 66.4
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 5.9e-37 157.9 144 57.6
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 5.0e-36 154.8 131 63.4
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 1.9e-35 152.9 145 52.4
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 6.1e-34 147.9 147 52.4
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.8e-33 146.4 114 63.2
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.0e-33 145.6 119 58.8
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 5.2e-33 144.8 119 58.8
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 2.6e-32 142.5 146 50.0
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 2.6e-32 142.5 115 60.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 6.3e-31 137.9 109 62.4
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.1e-30 137.1 151 52.3
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.4e-30 136.7 148 49.3
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 1.8e-30 136.3 109 60.6
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 1.7e-28 129.8 106 67.9
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 1.7e-28 129.8 149 53.7
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.8e-28 128.6 107 66.4
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.5e-27 126.7 102 61.8
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 3.2e-27 125.6 108 62.0
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.2e-27 125.2 184 42.9
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.2e-26 123.6 74 87.8
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.2e-26 123.6 148 52.0
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 3.6e-26 122.1 106 63.2
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.2e-24 117.1 116 58.6
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 1.2e-24 117.1 114 54.4
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.5e-24 114.4 123 55.3
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.4e-22 109.4 152 43.4
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 5.4e-22 108.2 73 76.7
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 5.0e-20 101.7 142 47.2
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 8.0e-18 94.4 136 41.9
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.4e-17 93.6 78 57.7
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.3e-17 92.8 119 49.6
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.3e-17 92.8 164 37.8
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.6e-16 89.4 88 53.4
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 9.8e-16 87.4 166 34.3
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.3e-12 77.0 95 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 2.3e-12 76.3 75 58.7
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 2.3e-12 76.3 151 37.1
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 2.3e-12 76.3 67 49.3
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 4.3e-11 72.0 145 35.9
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 3.6e-10 68.9 39 84.6


User provided reference genes

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