Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 2.4e-235 818.5 447 100.0
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 6.3e-183 644.4 447 79.6
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 2.7e-178 629.0 454 77.8
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 3.6e-178 628.6 437 79.6
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 3.9e-132 475.7 507 62.3
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 2.9e-95 353.2 571 48.0
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 1.4e-94 350.9 576 47.7
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 6.3e-74 282.3 555 41.8
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 3.5e-64 250.0 670 36.3
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 7.2e-62 242.3 511 38.4
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.6e-56 224.6 466 39.1
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.4e-49 200.7 472 37.7
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 5.4e-33 146.4 453 32.7
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 9.5e-30 135.6 166 41.6
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.8e-29 134.0 160 42.5
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.2e-27 128.6 102 54.9
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 2.6e-27 127.5 451 27.9
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 1.3e-26 125.2 97 57.7
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 3.7e-26 123.6 98 53.1
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.9e-26 123.2 107 51.4
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 6.4e-26 122.9 102 52.9
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 6.4e-26 122.9 102 52.9
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.1e-25 122.1 136 46.3
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.4e-25 121.7 123 46.3
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 1.9e-25 121.3 107 50.5
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.4e-25 120.9 135 45.9
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 2.7e-24 117.5 102 50.0
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 3.5e-24 117.1 119 48.7
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 3.5e-24 117.1 143 42.0
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 4.6e-24 116.7 359 27.9
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 6.0e-24 116.3 113 48.7
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 1.7e-23 114.8 159 37.7
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 3.0e-23 114.0 94 53.2
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 3.9e-23 113.6 103 46.6
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 1.1e-22 112.1 128 43.8
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 1.1e-22 112.1 107 41.1
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.9e-22 111.3 97 46.4
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 3.3e-22 110.5 281 32.0
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 4.3e-22 110.2 124 42.7
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 4.3e-22 110.2 124 42.7
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 4.3e-22 110.2 106 43.4
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.3e-22 110.2 193 32.1
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 4.3e-22 110.2 140 40.0
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 4.3e-22 110.2 120 44.2
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.2e-21 108.6 92 48.9
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 2.1e-21 107.8 96 50.0
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 3.6e-21 107.1 126 42.1
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 4.7e-21 106.7 281 27.4
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 4.7e-21 106.7 105 45.7
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 6.2e-21 106.3 154 37.7
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.8e-20 104.8 100 46.0
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-20 104.4 100 44.0
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 6.8e-20 102.8 99 48.5
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 6.8e-20 102.8 115 43.5
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.8e-20 102.8 137 38.7
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 1.2e-19 102.1 393 27.0
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.2e-19 102.1 108 40.7
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 1.5e-19 101.7 145 38.6
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.0e-19 101.3 128 39.1
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 2.6e-19 100.9 98 46.9
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 3.4e-19 100.5 282 28.4
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 7.6e-19 99.4 113 41.6
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 9.9e-19 99.0 139 38.1
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 1.7e-18 98.2 98 44.9
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 1.7e-18 98.2 93 45.2
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 2.9e-18 97.4 135 40.0
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 4.9e-18 96.7 98 41.8
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 6.4e-18 96.3 153 39.9
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 8.4e-18 95.9 100 43.0
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.4e-17 95.1 98 41.8
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.4e-17 95.1 444 25.0
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.2e-17 93.6 98 41.8
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 4.2e-17 93.6 128 39.8
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 5.4e-17 93.2 109 39.4
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 5.4e-17 93.2 109 39.4
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 5.4e-17 93.2 97 42.3
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 1.6e-16 91.7 85 47.1
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 1.6e-16 91.7 107 41.1
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-16 91.3 109 43.1
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 3.5e-16 90.5 109 43.1
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 6.0e-16 89.7 93 46.2
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 6.0e-16 89.7 130 35.4
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 6.0e-16 89.7 98 40.8
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 1.0e-15 89.0 464 25.4
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.0e-15 89.0 100 40.0
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 1.7e-15 88.2 449 25.6
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.3e-15 87.8 109 42.2
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 2.3e-15 87.8 107 41.1
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 6.6e-15 86.3 121 38.0
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 6.6e-15 86.3 449 24.1
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 6.6e-15 86.3 467 22.9
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 8.7e-15 85.9 139 36.0
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 8.7e-15 85.9 139 36.0
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.1e-14 85.5 118 37.3
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.1e-14 85.5 510 25.5
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 1.9e-14 84.7 100 42.0
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 2.5e-14 84.3 93 40.9
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 3.3e-14 84.0 465 24.5
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.6e-14 83.2 117 39.3
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 7.3e-14 82.8 138 38.4
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 9.6e-14 82.4 117 39.3
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 9.6e-14 82.4 117 39.3
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 4.8e-13 80.1 94 44.7
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.8e-13 80.1 92 41.3
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 4.8e-13 80.1 101 37.6
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 6.2e-13 79.7 93 38.7
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 6.2e-13 79.7 101 38.6
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 6.2e-13 79.7 98 38.8
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 6.2e-13 79.7 74 43.2
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 8.1e-13 79.3 319 27.3
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 1.1e-12 79.0 120 36.7
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.4e-12 78.6 101 38.6
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.4e-12 78.6 93 40.9
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 1.8e-12 78.2 99 42.4
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.4e-12 77.8 94 39.4
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.4e-12 77.8 92 39.1
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.4e-12 77.8 92 39.1
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 4.0e-12 77.0 101 37.6
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 5.3e-12 76.6 93 37.6
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 5.3e-12 76.6 143 30.8
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 6.9e-12 76.3 60 46.7
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 6.9e-12 76.3 92 43.5
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 9.0e-12 75.9 95 38.9
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 9.0e-12 75.9 92 39.1
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 9.0e-12 75.9 90 36.7
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 9.0e-12 75.9 93 37.6
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.2e-11 75.5 93 39.8
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 1.2e-11 75.5 101 38.6
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.2e-11 75.5 113 35.4
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.2e-11 75.5 113 35.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.5e-11 75.1 93 36.6
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 2.6e-11 74.3 92 40.2
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 2.6e-11 74.3 416 24.5
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 3.4e-11 73.9 462 25.1
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 4.4e-11 73.6 137 29.9
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 4.4e-11 73.6 98 35.7
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 5.8e-11 73.2 97 36.1
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 9.9e-11 72.4 93 37.6
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 9.9e-11 72.4 93 40.9
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.7e-10 71.6 128 32.0
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.7e-10 71.6 377 24.1
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 3.8e-10 70.5 96 33.3
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 4.9e-10 70.1 143 33.6
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 6.4e-10 69.7 122 32.0
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 6.4e-10 69.7 97 36.1
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 8.4e-10 69.3 120 33.3
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 8.4e-10 69.3 98 37.8
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.1e-09 68.9 140 31.4
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.4e-09 68.6 79 43.0
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.4e-09 68.6 92 37.0
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.4e-09 68.6 95 36.8
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 2.4e-09 67.8 105 34.3
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.4e-09 67.8 389 25.2
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 3.2e-09 67.4 87 41.4
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 3.2e-09 67.4 124 34.7
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 3.2e-09 67.4 102 35.3
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.2e-09 67.0 91 36.3
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 4.2e-09 67.0 138 33.3
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.4e-09 66.6 387 24.8
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 5.4e-09 66.6 94 39.4
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 5.4e-09 66.6 82 42.7
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 9.3e-09 65.9 143 32.2
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 9.3e-09 65.9 103 35.0
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.6e-08 65.1 147 34.0
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.6e-08 65.1 84 38.1
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 3.5e-08 63.9 115 32.2
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 4.6e-08 63.5 135 33.3
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 7.9e-08 62.8 102 40.2
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.0e-07 62.4 61 44.3
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.3e-07 62.0 92 33.7
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 2.3e-07 61.2 140 30.0
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 8.7e-07 59.3 74 41.9
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea HOM05D003174 ORTHO05D003439 4.3e-06 57.0 52 46.2
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 7.3e-06 56.2 82 34.1


User provided reference genes

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