Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13035 Brassica carinata HOM05D006154 ORTHO05D007965 1.1e-56 223.0 107 100.0
BcaC03g13033 Brassica carinata HOM05D006154 ORTHO05D007965 5.1e-38 161.0 78 100.0
C02p00770 Brassica napus HOM05D006154 ORTHO05D007965 3.3e-37 158.3 78 97.4
BolC2t06075H Brassica oleracea HOM05D006154 ORTHO05D007965 3.3e-37 158.3 78 97.4
AL6G12360 Arabidopsis lyrata HOM05D006154 ORTHO05D007965 5.6e-37 157.5 79 94.9
Carub.0006s0186 Capsella rubella HOM05D006154 ORTHO05D007965 5.6e-37 157.5 79 94.9
Sp6g39620 Schrenkiella parvula HOM05D006154 ORTHO05D007965 5.6e-37 157.5 79 93.7
AT5G03070 Arabidopsis thaliana HOM05D006154 ORTHO05D007965 3.6e-36 154.8 78 94.9
BcaB05g21853 Brassica carinata HOM05D006154 ORTHO05D007965 1.1e-35 153.3 78 94.9
C09p73680 Brassica napus HOM05D006154 ORTHO05D007965 1.4e-35 152.9 79 93.7
BraA02t04742Z Brassica rapa HOM05D006154 ORTHO05D007965 1.8e-35 152.5 78 93.6
A10p32800 Brassica napus HOM05D006154 ORTHO05D007965 2.4e-35 152.1 79 92.4
Thhalv10013263m.g Eutrema salsugineum HOM05D006154 ORTHO05D007965 3.1e-35 151.8 78 92.3
BcaNung04736 Brassica carinata HOM05D006154 ORTHO05D007965 4.0e-35 151.4 79 92.4
BolC9t60098H Brassica oleracea HOM05D006154 ORTHO05D007965 4.0e-35 151.4 79 92.4
Aa31LG1G21970 Aethionema arabicum HOM05D006154 ORTHO05D007965 1.2e-34 149.8 79 89.9
BcaNung05506 Brassica carinata HOM05D006154 ORTHO05D007965 5.8e-34 147.5 79 89.9
Cpa.g.sc156.17 Carica papaya HOM05D006154 ORTHO05D007965 5.8e-34 147.5 78 89.7
BcaC06g32030 Brassica carinata HOM05D006154 ORTHO05D007965 7.6e-34 147.1 79 89.9
Psat6g070240 Pisum sativum HOM05D006154 ORTHO05D007965 1.7e-33 146.0 79 87.3
THA.LOC104816324 Tarenaya hassleriana HOM05D006154 ORTHO05D007965 1.7e-33 146.0 78 89.7
Glyma.13G137700 Glycine max HOM05D006154 ORTHO05D007965 2.9e-33 145.2 79 86.1
Lj5g0016415 Lotus japonicus HOM05D006154 ORTHO05D007965 6.4e-33 144.1 79 84.8
Medtr1g066760 Medicago truncatula HOM05D006154 ORTHO05D007965 6.4e-33 144.1 79 84.8
arahy.Tifrunner.gnm1.ann1.0R5WQW Arachis hypogaea HOM05D006154 ORTHO05D007965 8.4e-33 143.7 78 84.6
Dinv35724 Davidia involucrata HOM05D006154 ORTHO05D007965 8.4e-33 143.7 79 86.1
PSO384G0243 Papaver somniferum HOM05D006154 ORTHO05D007965 1.1e-32 143.3 79 82.3
QL07p045129 Quercus lobata HOM05D006154 ORTHO05D007965 1.1e-32 143.3 78 85.9
TPR.G30248 Trifolium pratense HOM05D006154 ORTHO05D007965 1.1e-32 143.3 77 87.0
Haze_20633 Corylus avellana HOM05D006154 ORTHO05D007965 1.4e-32 142.9 79 86.1
Potri.016G086600 Populus trichocarpa HOM05D006154 ORTHO05D007965 1.4e-32 142.9 78 84.6
Aqoxy6G01881 Aquilegia oxysepala HOM05D006154 ORTHO05D007965 1.9e-32 142.5 79 84.8
BraA10t45315Z Brassica rapa HOM05D006154 ORTHO05D007965 1.9e-32 142.5 81 86.4
Sc16g0003380 Simmondsia chinensis HOM05D006154 ORTHO05D007965 2.4e-32 142.1 78 84.6
Cfa017516 Carpinus fangiana HOM05D006154 ORTHO05D007965 3.2e-32 141.7 79 84.8
Lalb_Chr02g0156311 Lupinus albus HOM05D006154 ORTHO05D007965 3.2e-32 141.7 79 83.5
Sabra16G0092900 Salix brachista HOM05D006154 ORTHO05D007965 3.2e-32 141.7 79 84.8
VMungo0720G0570 Vigna mungo HOM05D006154 ORTHO05D007965 3.2e-32 141.7 77 84.4
Lj3A980T60 Lonicera japonica HOM05D006154 ORTHO05D007965 4.2e-32 141.4 78 84.6
Ah.15g092170 Amaranthus hybridus HOM05D006154 ORTHO05D007965 5.4e-32 141.0 78 83.3
COL.COLO4_27066 Corchorus olitorius HOM05D006154 ORTHO05D007965 5.4e-32 141.0 78 84.6
DCAR_009283 Daucus carota HOM05D006154 ORTHO05D007965 5.4e-32 141.0 78 87.2
Lsat_1_v5_gn_1_54041 Lactuca sativa HOM05D006154 ORTHO05D007965 7.1e-32 140.6 78 85.9
MSTRG.26722 Avicennia marina HOM05D006154 ORTHO05D007965 9.3e-32 140.2 78 83.3
MBI14_g42155_MAGBIO Magnolia biondii HOM05D006154 ORTHO05D007965 9.3e-32 140.2 78 82.1
Nitab4.5_0003871g0060 Nicotiana tabacum HOM05D006154 ORTHO05D007965 9.3e-32 140.2 78 83.3
arahy.Tifrunner.gnm1.ann1.T5YIFZ Arachis hypogaea HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 83.3
Ca_11457_v3 Cicer arietinum L. HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 82.1
Duzib128G0314 Durio zibethinus HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 84.6
Phvul.007G164500 Phaseolus vulgaris HOM05D006154 ORTHO05D007965 1.2e-31 139.8 77 83.1
SalBow4G2026 Salvia bowleyana HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 84.6
SalBow4G2224 Salvia bowleyana HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 84.6
Solyc10g084270.2 Solanum lycopersicum HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 83.3
Sopen10g033720 Solanum pennellii HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 83.3
PGSC0003DMG400010467 Solanum tuberosum HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 83.3
Thecc.05G055400 Theobroma cacao HOM05D006154 ORTHO05D007965 1.2e-31 139.8 78 83.3
Atru.chr8.2571 Acer truncatum HOM05D006154 ORTHO05D007965 1.6e-31 139.4 77 85.7
EL10Ac7g16509 Beta vulgaris HOM05D006154 ORTHO05D007965 1.6e-31 139.4 78 82.1
Gohir.D13G095900 Gossypium hirsutum HOM05D006154 ORTHO05D007965 1.6e-31 139.4 78 84.6
Gorai.001G248100 Gossypium raimondii HOM05D006154 ORTHO05D007965 1.6e-31 139.4 78 84.6
SGA_v2.0_scaffold35G14156 Striga asiatica HOM05D006154 ORTHO05D007965 1.6e-31 139.4 78 82.1
vmacro08709 Vaccinium macrocarpon HOM05D006154 ORTHO05D007965 1.6e-31 139.4 79 79.7
HanXRQChr11g0350031 Helianthus annuus HOM05D006154 ORTHO05D007965 2.1e-31 139.0 78 83.3
RcHm_v2.0_Chr3g0468961 Rosa chinensis HOM05D006154 ORTHO05D007965 2.1e-31 139.0 79 81.0
CSS0037460 Camellia sinensis var. sinensis HOM05D006154 ORTHO05D007965 2.7e-31 138.7 79 82.3
Nitab4.5_0004924g0020 Nicotiana tabacum HOM05D006154 ORTHO05D007965 2.7e-31 138.7 77 81.8
TAR623G0796 Trochodendron aralioides HOM05D006154 ORTHO05D007965 2.7e-31 138.7 79 82.3
Gohir.A13G079300 Gossypium hirsutum HOM05D006154 ORTHO05D007965 3.5e-31 138.3 78 83.3
HPP92_012050 Vanilla planifolia HOM05D006154 ORTHO05D007965 3.5e-31 138.3 79 82.3
AUR62042541 Chenopodium quinoa HOM05D006154 ORTHO05D007965 4.6e-31 137.9 78 79.5
Nn2g13020 Nelumbo nucifera HOM05D006154 ORTHO05D007965 4.6e-31 137.9 79 79.7
Peaxi162Scf00472g00415 Petunia axillaris HOM05D006154 ORTHO05D007965 4.6e-31 137.9 78 82.1
CiPaw.09G179300 Carya illinoinensis HOM05D006154 ORTHO05D007965 7.8e-31 137.1 79 81.0
Prupe.6G240100 Prunus persica HOM05D006154 ORTHO05D007965 7.8e-31 137.1 79 82.3
Ciclev10011496m.g Citrus clementina HOM05D006154 ORTHO05D007965 1.0e-30 136.7 78 84.6
MELO3C014681.2 Cucumis melo HOM05D006154 ORTHO05D007965 1.0e-30 136.7 78 82.1
FAN05G2896 Fragaria x ananassa HOM05D006154 ORTHO05D007965 1.3e-30 136.3 79 79.7
FAN09G0481 Fragaria x ananassa HOM05D006154 ORTHO05D007965 1.3e-30 136.3 79 79.7
Sed0025846 Sechium edule HOM05D006154 ORTHO05D007965 1.3e-30 136.3 79 81.0
CAN.G915.15 Capsicum annuum HOM05D006154 ORTHO05D007965 1.7e-30 136.0 78 82.1
CsaV3_4G023330 Cucumis sativus L. HOM05D006154 ORTHO05D007965 1.7e-30 136.0 78 80.8
ECA248G0750 Erigeron canadensis HOM05D006154 ORTHO05D007965 1.7e-30 136.0 78 80.8
Manes.08G004000 Manihot esculenta HOM05D006154 ORTHO05D007965 1.7e-30 136.0 79 82.3
GSVIVG01025642001 Vitis vinifera HOM05D006154 ORTHO05D007965 1.7e-30 136.0 78 82.1
PGR142G2197 Punica granatum HOM05D006154 ORTHO05D007965 2.3e-30 135.6 77 80.5
ATR0314G029 Amborella trichopoda HOM05D006154 ORTHO05D007965 3.0e-30 135.2 75 81.3
AUR62040031 Chenopodium quinoa HOM05D006154 ORTHO05D007965 3.0e-30 135.2 78 79.5
ClCG02G024000 Citrullus lanatus HOM05D006154 ORTHO05D007965 3.0e-30 135.2 78 80.8
Eucgr.K03215 Eucalyptus grandis HOM05D006154 ORTHO05D007965 3.0e-30 135.2 77 84.4
Cc06_g03650 Coffea canephora HOM05D006154 ORTHO05D007965 3.9e-30 134.8 78 79.5
Rhsim04G0149800 Rhododendron simsii HOM05D006154 ORTHO05D007965 3.9e-30 134.8 79 78.5
Actinidia05266 Actinidia chinensis HOM05D006154 ORTHO05D007965 5.1e-30 134.4 78 82.1
Hund20188 Selenicereus undatus HOM05D006154 ORTHO05D007965 5.1e-30 134.4 78 80.8
MD12G1123100 Malus domestica HOM05D006154 ORTHO05D007965 6.6e-30 134.0 78 82.1
CANSAT80G1906 Cannabis sativa HOM05D006154 ORTHO05D007965 2.5e-29 132.1 78 79.5
Lsat_1_v5_gn_6_30041 Lactuca sativa HOM05D006154 ORTHO05D007965 3.3e-29 131.7 78 80.8
Mapoly0226s0004 Marchantia polymorpha HOM05D006154 ORTHO05D007965 3.6e-28 128.3 78 73.1
Zm00001eb336070 Zea mays HOM05D006154 ORTHO05D007965 6.2e-28 127.5 76 76.3
Migut.L01665 Erythranthe guttata HOM05D006154 ORTHO05D007965 8.1e-28 127.1 78 78.2
ECA233G0779 Erigeron canadensis HOM05D006154 ORTHO05D007965 1.1e-27 126.7 78 76.9
Os01g0158000 Oryza sativa ssp. japonica HOM05D006154 ORTHO05D007965 1.8e-27 125.9 79 72.2
Pp3c21_840 Physcomitrium patens HOM05D006154 ORTHO05D007965 5.3e-27 124.4 77 71.4
CSS0029494 Camellia sinensis var. sinensis HOM05D006154 ORTHO05D007965 1.2e-26 123.2 108 60.2
HanXRQChr13g0399551 Helianthus annuus HOM05D006154 ORTHO05D007965 1.3e-25 119.8 78 71.8
Pp3c18_21610 Physcomitrium patens HOM05D006154 ORTHO05D007965 2.2e-25 119.0 77 68.8
CBR_g52325 Chara braunii HOM05D006154 ORTHO05D007965 5.4e-24 114.4 78 67.9
AagrBONN_evm.TU.Sc2ySwM_228.4934 Anthoceros agrestis HOM05D006154 ORTHO05D007965 1.6e-23 112.8 78 66.7
unitig_0.g691 Utricularia gibba HOM05D006154 ORTHO05D007095 4.3e-21 104.8 70 71.4
MD04G1105700 Malus domestica HOM05D006154 ORTHO05D007965 2.0e-18 95.9 56 80.4
SMO174G0075 Selaginella moellendorffii HOM05D006154 ORTHO05D007965 3.9e-14 81.6 71 56.3
Cre03.g161100 Chlamydomonas reinhardtii HOM05D006154 ORTHO05D007965 1.7e-09 66.2 77 46.8
CDE04G0384 Ceratophyllum demersum HOM05D006154 ORTHO05D007965 1.3e-06 56.6 31 80.6


User provided reference genes

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