Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-65 252.7 136 100.0
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-65 252.7 136 100.0
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 3.8e-62 241.5 136 95.6
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 4.9e-62 241.1 136 95.6
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 3.9e-59 231.5 135 92.6
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 3.9e-59 231.5 135 92.6
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 8.7e-59 230.3 136 91.2
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 1.7e-54 216.1 135 87.4
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 2.4e-53 212.2 135 86.7
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 4.6e-52 208.0 135 84.4
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 6.0e-52 207.6 124 89.5
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 3.0e-51 205.3 135 85.2
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 5.1e-51 204.5 135 85.9
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 3.3e-50 201.8 135 82.2
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 4.3e-50 201.4 135 85.2
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 4.3e-50 201.4 135 85.2
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 4.3e-50 201.4 135 85.2
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 2.1e-49 199.1 135 84.4
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 6.2e-49 197.6 135 83.7
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 1.4e-48 196.4 134 78.4
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 2.1e-44 182.6 149 73.2
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 4.6e-36 154.8 124 66.9
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 6.7e-35 151.0 127 64.6
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 3.3e-34 148.7 116 65.5
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 4.3e-34 148.3 130 64.6
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 5.6e-34 147.9 130 61.5
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 9.6e-34 147.1 129 59.7
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 9.6e-34 147.1 123 63.4
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 6.2e-33 144.4 131 63.4
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 6.2e-33 144.4 132 60.6
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.1e-32 143.7 127 63.0
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 1.4e-32 143.3 127 63.0
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 1.8e-32 142.9 126 62.7
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 4.0e-32 141.7 128 60.2
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 5.3e-32 141.4 130 63.1
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 6.9e-32 141.0 134 57.5
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 7.6e-31 137.5 112 64.3
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.7e-30 136.3 123 59.3
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 4.9e-30 134.8 129 62.0
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 6.5e-30 134.4 131 59.5
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 6.5e-30 134.4 124 62.1
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 8.4e-30 134.0 119 65.5
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 8.4e-30 134.0 124 59.7
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.4e-29 133.3 125 60.0
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.4e-29 133.3 127 60.6
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 1.4e-29 133.3 123 61.0
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 1.4e-29 133.3 123 59.3
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 1.9e-29 132.9 123 61.0
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 1.9e-29 132.9 134 57.5
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 2.5e-29 132.5 121 60.3
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 3.2e-29 132.1 130 59.2
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 4.2e-29 131.7 123 60.2
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 7.1e-29 131.0 129 54.3
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 7.1e-29 131.0 128 57.8
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.2e-28 130.2 101 65.3
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.2e-28 130.2 105 60.0
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 1.6e-28 129.8 120 60.0
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.7e-28 129.0 120 60.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 2.7e-28 129.0 123 57.7
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 3.5e-28 128.6 132 55.3
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 4.6e-28 128.3 128 57.0
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 6.0e-28 127.9 123 57.7
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.3e-27 126.7 121 57.9
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 2.3e-27 125.9 132 53.0
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 3.9e-27 125.2 132 57.6
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 3.9e-27 125.2 128 54.7
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 6.7e-27 124.4 116 57.8
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 1.9e-26 122.9 121 58.7
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 2.5e-26 122.5 134 51.5
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.3e-26 121.7 121 57.0
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 4.3e-26 121.7 128 53.9
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 5.7e-26 121.3 132 55.3
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 5.7e-26 121.3 118 55.1
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 5.7e-26 121.3 121 57.9
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 5.7e-26 121.3 111 59.5
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 7.4e-26 120.9 132 56.1
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 7.4e-26 120.9 99 60.6
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 7.4e-26 120.9 121 57.9
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 9.7e-26 120.6 123 56.1
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.6e-25 119.8 136 53.7
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 2.2e-25 119.4 101 59.4
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 2.2e-25 119.4 120 52.5
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 2.8e-25 119.0 128 53.9
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.7e-25 118.6 133 52.6
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 1.1e-24 117.1 117 54.7
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 3.1e-24 115.5 121 55.4
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 6.9e-24 114.4 125 53.6
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 2.0e-23 112.8 121 54.5
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.0e-23 112.8 105 59.0
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 2.6e-23 112.5 115 56.5
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 2.6e-23 112.5 115 56.5
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 3.4e-23 112.1 121 54.5
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 5.9e-23 111.3 81 67.9
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 7.6e-23 110.9 134 52.2
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.0e-22 110.5 127 52.8
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.3e-22 110.2 124 50.0
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 1.7e-22 109.8 134 50.7
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 3.8e-22 108.6 138 50.7
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 6.5e-22 107.8 86 60.5
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 1.4e-21 106.7 107 55.1
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 1.9e-21 106.3 131 48.1
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 7.2e-21 104.4 119 48.7
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 9.4e-21 104.0 105 55.2
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 3.6e-20 102.1 133 46.6
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 4.6e-20 101.7 115 46.1
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 6.1e-20 101.3 131 44.3
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 6.1e-20 101.3 98 56.1
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.8e-19 99.8 127 46.5
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 5.1e-19 98.2 128 46.1
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 1.1e-18 97.1 123 47.2
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 1.1e-18 97.1 109 49.5
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 3.3e-18 95.5 65 72.3
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 9.7e-18 94.0 97 51.5
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.7e-17 93.2 71 63.4
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.4e-16 90.1 65 72.3
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 1.4e-16 90.1 99 48.5
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.8e-16 89.7 127 41.7
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 6.9e-16 87.8 115 47.0
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 2.0e-15 86.3 78 53.8
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 1.0e-14 84.0 86 52.3
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 1.6e-12 76.6 87 51.7
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 1.5e-10 70.1 89 51.7
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 7.4e-10 67.8 123 35.0
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 1.2e-07 60.5 112 33.9
A10p32810 Brassica napus HOM05D000156 ORTHO05D001430 2.6e-07 59.3 70 57.1
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 3.8e-06 55.5 131 32.1


User provided reference genes

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