Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.5e-127 458.8 223 100.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 4.3e-124 448.0 222 97.7
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 4.3e-124 448.0 222 97.7
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 4.3e-124 448.0 223 97.3
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-120 436.4 227 93.4
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-119 432.6 218 94.5
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-119 432.6 218 94.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 2.5e-119 432.2 223 93.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 2.2e-112 409.1 225 89.3
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.4e-111 406.4 219 89.5
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 4.6e-110 401.4 225 86.7
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.3e-109 399.1 222 87.8
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 6.7e-109 397.5 222 87.8
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.4e-106 389.8 225 82.7
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 7.9e-102 374.0 218 85.8
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.0e-101 372.1 218 83.0
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.0e-101 372.1 218 83.0
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 6.3e-99 364.4 226 80.5
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.8e-93 346.3 214 76.6
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.2e-93 344.7 222 74.3
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.5e-92 343.2 216 75.9
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 9.7e-92 340.5 220 76.8
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 5.3e-90 334.7 209 75.1
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.7e-88 329.7 209 75.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 3.8e-88 328.6 218 71.6
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 6.5e-88 327.8 216 72.2
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 8.5e-88 327.4 216 73.6
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.5e-87 325.9 211 73.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 4.2e-87 325.1 214 72.9
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 4.2e-87 325.1 211 73.0
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 5.5e-87 324.7 211 72.5
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 9.4e-87 323.9 220 70.0
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.1e-86 322.8 209 76.1
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 6.1e-86 321.2 218 71.1
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 4.0e-85 318.5 219 68.9
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 6.8e-85 317.8 212 74.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.8e-85 317.4 209 72.2
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.2e-84 317.0 218 72.5
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.5e-84 316.6 211 73.0
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.5e-84 316.6 220 69.1
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 2.6e-84 315.8 215 71.6
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 3.4e-84 315.5 214 71.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 7.5e-84 314.3 211 70.1
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.2e-83 312.8 209 70.8
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.8e-83 312.4 211 68.7
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.3e-83 311.2 218 68.8
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 8.3e-83 310.8 209 72.2
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.4e-82 310.1 211 68.2
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.4e-82 310.1 211 69.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-82 309.7 211 69.7
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.4e-82 309.3 211 68.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 3.1e-82 308.9 210 70.0
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.1e-82 308.9 210 70.0
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 7.0e-82 307.8 217 70.5
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.2e-81 307.0 211 72.0
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.2e-81 307.0 212 68.9
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.6e-81 306.6 211 69.2
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.7e-81 305.8 211 70.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 3.5e-81 305.4 210 69.0
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 4.5e-81 305.1 210 68.1
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 7.7e-81 304.3 211 69.2
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.0e-80 303.9 220 66.8
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.2e-80 302.8 211 68.2
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 2.9e-80 302.4 216 66.2
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.9e-80 302.4 214 68.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 6.5e-80 301.2 221 67.0
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 8.5e-80 300.8 213 67.1
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 2.5e-79 299.3 169 86.4
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 3.2e-79 298.9 211 69.2
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 3.2e-79 298.9 212 68.9
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-78 297.0 211 68.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-78 297.0 211 68.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-78 297.0 211 68.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-78 297.0 211 68.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.2e-78 297.0 211 68.7
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.6e-78 296.6 217 66.8
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.1e-78 296.2 213 66.7
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 6.1e-78 294.7 222 67.1
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.3e-75 287.0 214 66.4
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.8e-75 285.8 218 66.5
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 3.1e-74 282.3 210 65.2
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.1e-74 282.3 215 67.0
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.1e-74 282.3 215 67.0
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 4.1e-74 282.0 210 65.7
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 7.0e-74 281.2 216 65.7
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.2e-73 280.4 212 64.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.6e-73 280.0 212 65.1
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 2.0e-73 279.6 210 65.7
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 2.7e-73 279.3 202 67.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.0e-72 277.3 211 65.9
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.3e-72 276.9 209 65.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.3e-72 276.2 211 65.9
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 2.3e-72 276.2 210 64.3
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 2.3e-72 276.2 215 64.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 3.8e-72 275.4 183 72.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 6.6e-72 274.6 210 64.8
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.1e-71 273.9 210 62.9
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.1e-71 273.9 210 62.9
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.9e-71 273.1 227 61.7
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.2e-70 270.4 209 64.1
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.1e-70 269.6 210 60.0
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 3.6e-70 268.9 211 63.5
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 3.6e-70 268.9 215 62.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 3.0e-69 265.8 228 61.0
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 6.8e-69 264.6 216 61.1
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.2e-68 263.8 209 65.1
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 2.6e-68 262.7 210 61.9
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 7.5e-68 261.2 211 62.1
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 9.8e-68 260.8 217 59.4
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 4.9e-67 258.5 213 57.7
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 4.9e-67 258.5 212 58.5
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 4.9e-67 258.5 212 58.5
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.2e-66 255.8 219 59.4
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 2.0e-65 253.1 211 60.7
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 8.6e-64 247.7 214 59.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 9.5e-63 244.2 211 53.6
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.0e-61 240.7 215 52.6
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 5.2e-61 238.4 210 56.2
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 9.8e-60 234.2 213 54.5
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.7e-59 233.4 164 68.3
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 3.7e-59 232.3 164 69.5
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.4e-59 231.5 214 57.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.2e-58 229.2 165 66.1
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 7.0e-58 228.0 168 66.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.9e-55 219.9 164 62.8
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.2e-54 214.9 159 66.0
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 3.4e-52 209.1 131 72.5
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.8e-52 207.6 210 55.2
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 4.1e-50 202.2 211 51.7
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 3.6e-46 189.1 213 50.2
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 8.9e-45 184.5 215 46.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 4.4e-44 182.2 128 67.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 3.8e-43 179.1 134 64.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.1e-38 163.3 210 47.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 4.4e-36 155.6 134 58.2
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.9e-31 140.2 91 74.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 1.1e-29 134.4 92 71.7
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.8e-28 128.6 94 67.0
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 6.7e-16 88.6 207 32.9
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 3.5e-09 66.2 162 31.5
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 2.3e-08 63.5 183 28.4
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 8.7e-08 61.6 141 29.1
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 8.7e-08 61.6 143 29.4
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 1.9e-07 60.5 186 28.5
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 3.3e-07 59.7 126 29.4
SMO367G0089 Selaginella moellendorffii HOM05D003144 ORTHO05D003539 4.3e-07 59.3 136 32.4
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 7.4e-07 58.5 133 28.6
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 1.3e-06 57.8 119 31.9
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 2.1e-06 57.0 134 32.1
AUR62007599 Chenopodium quinoa HOM05D003144 ORTHO05D003539 4.8e-06 55.8 141 27.7
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 4.8e-06 55.8 145 26.9
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 4.8e-06 55.8 171 25.7
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 8.2e-06 55.1 141 26.2


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