Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 3.7e-235 817.8 393 100.0
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 9.7e-228 793.1 383 99.0
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 1.3e-192 676.4 380 88.2
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 3.9e-176 621.7 394 79.2
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 1.6e-169 599.7 394 76.9
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 1.3e-168 596.7 290 99.0
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 1.9e-167 592.8 394 76.4
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-165 585.5 381 78.2
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 2.4e-162 575.9 394 75.1
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 4.1e-162 575.1 409 72.6
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 7.1e-162 574.3 400 74.0
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 5.8e-156 554.7 404 71.8
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 1.9e-154 549.7 402 71.1
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 3.5e-145 518.8 410 67.3
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 5.1e-144 515.0 410 66.8
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 3.6e-142 508.8 431 64.0
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 4.8e-142 508.4 399 66.7
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 8.1e-142 507.7 393 67.4
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-140 503.4 422 64.5
BolC2t06134H Brassica oleracea HOM05D007309 ORTHO05D010099 7.9e-137 491.1 363 71.6
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 5.6e-135 485.0 408 65.2
BcaC03g12955 Brassica carinata HOM05D007309 ORTHO05D010099 2.8e-126 456.1 391 63.7
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 1.4e-125 453.8 411 61.1
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 4.1e-117 425.6 209 95.7
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 4.2e-114 415.6 298 71.5
C02p01460 Brassica napus HOM05D007309 ORTHO05D010099 8.2e-110 401.4 193 99.0
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 2.2e-107 393.3 378 57.7
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 1.8e-104 383.6 373 57.9
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-103 380.6 376 57.4
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 4.2e-74 282.7 398 44.7
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 9.5e-74 281.6 396 43.7
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 1.2e-71 274.6 330 50.0
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 2.0e-71 273.9 127 98.4
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 2.6e-71 273.5 401 43.6
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 1.4e-69 267.7 398 43.2
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 1.8e-69 267.3 395 43.3
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 4.1e-69 266.2 397 42.6
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-68 263.8 392 42.6
C02p01200 Brassica napus HOM05D007309 ORTHO05D010099 2.0e-68 263.8 210 66.7
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 2.0e-68 263.8 395 42.5
A01p10480 Brassica napus HOM05D007309 ORTHO05D010099 4.5e-68 262.7 397 42.6
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 1.3e-67 261.2 397 41.8
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 1.7e-67 260.8 397 41.6
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 2.9e-67 260.0 411 41.8
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 8.6e-67 258.5 388 42.0
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 3.3e-66 256.5 398 43.0
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 3.3e-66 256.5 398 43.0
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 1.3e-62 244.6 393 40.7
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 1.1e-58 231.5 396 40.4
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 7.3e-58 228.8 382 40.1
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-52 210.7 397 41.1
BcaC06g31633 Brassica carinata HOM05D007309 ORTHO05D010099 1.5e-50 204.5 245 48.6
BcaB05g21793 Brassica carinata HOM05D007309 ORTHO05D010099 8.9e-48 195.3 150 68.7
C02p01280 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-42 177.9 81 98.8
C02p01290 Brassica napus HOM05D007309 ORTHO05D010099 3.6e-41 173.3 84 97.6
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 3.1e-40 170.2 308 38.0
BolC1t01103H Brassica oleracea HOM05D007309 ORTHO05D010099 5.2e-40 169.5 148 60.1
BcaC03g12971 Brassica carinata HOM05D007309 ORTHO05D010099 3.8e-38 163.3 368 34.8
BolC2t06143H Brassica oleracea HOM05D007309 ORTHO05D010099 2.7e-36 157.1 139 59.7
BolC2t06128H Brassica oleracea HOM05D007309 ORTHO05D010099 7.8e-36 155.6 268 42.5
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 7.3e-34 149.1 386 30.6
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 6.2e-33 146.0 392 30.1
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 1.4e-32 144.8 195 44.1
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-32 144.1 181 42.5
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 9.0e-32 142.1 348 32.8
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.2e-30 137.5 393 31.6
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 2.9e-30 137.1 394 31.0
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.1e-29 135.2 210 37.6
C01p11350 Brassica napus HOM05D007309 ORTHO05D010099 3.0e-27 127.1 254 36.6
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 3.9e-27 126.7 180 37.2
BolC1t01104H Brassica oleracea HOM05D007309 ORTHO05D010099 8.7e-27 125.6 266 36.1
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 5.6e-26 122.9 177 39.0
AL4G19130 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 7.3e-26 122.5 204 36.3
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 9.6e-26 122.1 177 38.4
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 3.6e-25 120.2 385 27.5
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 3.6e-25 120.2 387 28.9
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 9.0e-24 115.5 386 28.5
BolC3t16103H Brassica oleracea HOM05D007309 ORTHO05D032970 4.9e-22 109.8 113 56.6
C03p38220 Brassica napus HOM05D007309 ORTHO05D032970 8.4e-22 109.0 104 59.6
C02p01410 Brassica napus HOM05D007309 ORTHO05D010099 1.0e-19 102.1 120 48.3
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 1.8e-19 101.3 156 41.0
BcaC01g05143 Brassica carinata HOM05D007309 ORTHO05D031751 2.3e-19 100.9 188 38.3
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 3.9e-19 100.1 329 28.6
BraA02t04778Z Brassica rapa HOM05D007309 ORTHO05D010099 6.7e-19 99.4 67 74.6
BcaB05g21782 Brassica carinata HOM05D007309 ORTHO05D010099 5.6e-18 96.3 96 55.2
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 9.6e-18 95.5 173 34.7
C02p01690 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-16 90.9 131 40.5
BolC2t06136H Brassica oleracea HOM05D007309 ORTHO05D010099 2.4e-16 90.9 60 68.3
BcaB05g21774 Brassica carinata HOM05D007309 ORTHO05D010099 9.0e-16 89.0 69 68.1
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 9.9e-15 85.5 171 35.7
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 1.3e-14 85.1 186 34.4
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 6.4e-14 82.8 314 26.4
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 8.4e-14 82.4 330 27.3
BcaNung05912 Brassica carinata HOM05D007309 ORTHO05D010099 1.1e-13 82.0 111 43.2
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 3.2e-13 80.5 172 34.3
BraA04t16224Z Brassica rapa HOM05D010965 ORTHO05D016023 3.2e-13 80.5 288 28.5
Carub.0001s3469 Capsella rubella HOM05D001456 ORTHO05D010099 9.3e-13 79.0 174 31.6
BcaB02g08395 Brassica carinata HOM05D010965 ORTHO05D016023 1.6e-12 78.2 287 29.6
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 1.3e-11 75.1 62 53.2
BcaC01g06784 Brassica carinata HOM05D007309 ORTHO05D032970 2.3e-11 74.3 78 51.3
C02p01350 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-10 70.9 70 55.7
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 5.6e-10 69.7 160 32.5
Thhalv10014870m.g Eutrema salsugineum HOM05D007309 ORTHO05D014840 2.1e-09 67.8 173 32.9
A04p05130 Brassica napus HOM05D010965 ORTHO05D016023 3.7e-09 67.0 257 29.2
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 6.2e-09 66.2 182 28.6
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 8.2e-09 65.9 190 26.8
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 6.9e-08 62.8 161 28.6
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 9.0e-08 62.4 114 36.0
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 9.0e-08 62.4 114 36.0
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.2e-07 62.0 117 30.8
BcaB05g22427 Brassica carinata HOM05D007309 ORTHO05D093831 4.5e-07 60.1 118 38.1
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 5.8e-07 59.7 107 33.6
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 7.6e-07 59.3 153 26.8
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 1.7e-06 58.2 107 32.7
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 3.8e-06 57.0 107 31.8
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 3.8e-06 57.0 107 31.8
C02p01400 Brassica napus HOM05D007309 ORTHO05D010099 4.9e-06 56.6 28 85.7
Nn3g21907 Nelumbo nucifera HOM05D001456 ORTHO05D002799 4.9e-06 56.6 141 28.4
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 4.9e-06 56.6 142 26.8
BolC7t41820H Brassica oleracea HOM05D023794 ORTHO05D028264 6.5e-06 56.2 142 31.7
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 6.5e-06 56.2 135 28.1
AUR62002684 Chenopodium quinoa HOM05D001456 ORTHO05D002799 8.4e-06 55.8 228 24.1
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 8.4e-06 55.8 135 27.4


User provided reference genes

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