Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g12960 Brassica carinata HOM05D007309 ORTHO05D010099 7.3e-289 996.5 501 100.0
C02p01750 Brassica napus HOM05D007309 ORTHO05D010099 2.6e-225 785.4 397 99.2
BcaC03g12961 Brassica carinata HOM05D007309 ORTHO05D010099 1.5e-209 733.0 397 94.5
BcaC03g12963 Brassica carinata HOM05D007309 ORTHO05D010099 1.4e-207 726.5 396 92.9
C02p01720 Brassica napus HOM05D007309 ORTHO05D010099 1.6e-203 713.0 411 88.6
C02p01480 Brassica napus HOM05D007309 ORTHO05D010099 5.2e-202 708.0 387 89.9
BolC2t06110H Brassica oleracea HOM05D007309 ORTHO05D010099 1.8e-194 682.9 393 88.3
BcaC03g12957 Brassica carinata HOM05D007309 ORTHO05D010099 3.1e-178 629.0 386 85.0
C02p01780 Brassica napus HOM05D007309 ORTHO05D010099 6.6e-173 611.3 386 81.9
BcaC03g12986 Brassica carinata HOM05D007309 ORTHO05D010099 8.7e-165 584.3 381 78.2
C02p01340 Brassica napus HOM05D007309 ORTHO05D010099 1.6e-163 580.1 402 75.4
BolC2t06134H Brassica oleracea HOM05D007309 ORTHO05D010099 9.3e-159 564.3 357 83.8
BcaB05g21772 Brassica carinata HOM05D007309 ORTHO05D010099 1.9e-151 540.0 382 72.5
C02p01790 Brassica napus HOM05D007309 ORTHO05D010099 1.8e-141 506.9 388 67.8
BolC2t06135H Brassica oleracea HOM05D007309 ORTHO05D010099 1.8e-141 506.9 390 68.2
BraA02t04799Z Brassica rapa HOM05D007309 ORTHO05D010099 7.4e-140 501.5 402 67.2
BcaB05g21775 Brassica carinata HOM05D007309 ORTHO05D010099 2.8e-139 499.6 408 64.7
C02p01800 Brassica napus HOM05D007309 ORTHO05D010099 1.4e-138 497.3 435 63.0
BcaC03g12956 Brassica carinata HOM05D007309 ORTHO05D010099 5.9e-137 491.9 417 62.8
C02p01380 Brassica napus HOM05D007309 ORTHO05D010099 2.5e-127 459.9 279 82.1
BcaC03g12955 Brassica carinata HOM05D007309 ORTHO05D010099 1.8e-125 453.8 382 65.2
BraA02t04794Z Brassica rapa HOM05D007309 ORTHO05D010099 2.6e-121 439.9 415 60.5
BcaC03g12991 Brassica carinata HOM05D007309 ORTHO05D010099 1.3e-120 437.6 418 60.5
BcaB05g21785 Brassica carinata HOM05D007309 ORTHO05D010099 4.7e-110 402.5 284 70.8
BcaC03g12970 Brassica carinata HOM05D007309 ORTHO05D010099 4.5e-105 386.0 361 58.4
BcaB05g21792 Brassica carinata HOM05D007309 ORTHO05D010099 6.6e-104 382.1 373 56.8
C02p01630 Brassica napus HOM05D007309 ORTHO05D010099 6.6e-104 382.1 360 58.1
C02p01240 Brassica napus HOM05D007309 ORTHO05D010099 1.5e-92 344.4 210 80.5
C02p01460 Brassica napus HOM05D007309 ORTHO05D010099 2.1e-81 307.4 221 74.7
BolC2t06111H Brassica oleracea HOM05D007309 ORTHO05D010099 1.1e-71 275.0 350 50.0
BcaC09g51621 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-68 264.2 406 43.3
A01p09730 Brassica napus HOM05D007309 ORTHO05D010099 7.6e-68 262.3 418 41.9
BraA01t00916Z Brassica rapa HOM05D007309 ORTHO05D010099 4.9e-67 259.6 407 41.8
BolC2t06133H Brassica oleracea HOM05D007309 ORTHO05D021684 6.4e-67 259.2 368 42.9
A01p10480 Brassica napus HOM05D007309 ORTHO05D010099 1.9e-66 257.7 415 41.2
C02p01710 Brassica napus HOM05D007309 ORTHO05D010099 2.4e-66 257.3 366 43.4
BraA01t00993Z Brassica rapa HOM05D007309 ORTHO05D010099 3.5e-65 253.4 417 40.8
BolC2t06164H Brassica oleracea HOM05D007309 ORTHO05D021684 4.6e-65 253.1 394 41.6
BcaB05g21746 Brassica carinata HOM05D007309 ORTHO05D010099 6.0e-65 252.7 412 41.0
C02p02060 Brassica napus HOM05D007309 ORTHO05D021684 7.8e-65 252.3 368 43.5
BcaC03g13124 Brassica carinata HOM05D007309 ORTHO05D021684 1.3e-64 251.5 370 41.9
BolC2t06167H Brassica oleracea HOM05D007309 ORTHO05D021684 2.3e-64 250.8 367 42.5
BcaC03g13128 Brassica carinata HOM05D007309 ORTHO05D021684 1.1e-63 248.4 367 42.8
C02p01200 Brassica napus HOM05D007309 ORTHO05D010099 3.3e-63 246.9 231 63.2
BcaC03g17362 Brassica carinata HOM05D007309 ORTHO05D032575 4.8e-62 243.0 370 42.7
C02p53010 Brassica napus HOM05D007309 ORTHO05D032575 4.8e-62 243.0 370 42.7
BolC2t07109H Brassica oleracea HOM05D007309 ORTHO05D040036 5.8e-60 236.1 395 41.8
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.8e-54 217.2 382 40.3
BolC2t11370H Brassica oleracea HOM05D007309 ORTHO05D032575 4.0e-53 213.4 359 38.4
BcaC05g26633 Brassica carinata HOM05D007309 ORTHO05D010099 1.8e-48 198.0 368 38.6
C02p01450 Brassica napus HOM05D007309 ORTHO05D010099 2.3e-48 197.6 125 77.6
BcaC06g31633 Brassica carinata HOM05D007309 ORTHO05D010099 8.7e-48 195.7 234 47.4
BcaB05g21793 Brassica carinata HOM05D007309 ORTHO05D010099 2.8e-46 190.7 146 65.8
Thhalv10014127m.g Eutrema salsugineum HOM05D007309 ORTHO05D010099 3.9e-40 170.2 287 38.7
BolC2t06128H Brassica oleracea HOM05D007309 ORTHO05D010099 4.8e-38 163.3 254 42.5
BcaC03g12971 Brassica carinata HOM05D007309 ORTHO05D010099 2.0e-36 157.9 353 34.3
BolC1t01103H Brassica oleracea HOM05D007309 ORTHO05D010099 5.8e-36 156.4 175 53.7
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 1.7e-35 154.8 185 46.5
BolC2t06143H Brassica oleracea HOM05D007309 ORTHO05D010099 8.4e-35 152.5 151 57.0
A04p22460 Brassica napus HOM05D007309 ORTHO05D010099 3.3e-31 140.6 179 41.9
C02p01290 Brassica napus HOM05D007309 ORTHO05D010099 6.9e-29 132.9 106 68.9
AL5G13820 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.2e-28 132.1 200 41.0
Carub.0004s1451 Capsella rubella HOM05D007309 ORTHO05D015909 1.5e-28 131.7 424 29.7
BcaC03g12967 Brassica carinata HOM05D003180 ORTHO05D014840 2.0e-28 131.3 354 33.3
BcaC03g12964 Brassica carinata HOM05D007309 ORTHO05D010099 5.9e-28 129.8 365 31.0
AL4G34490 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.9e-27 127.5 397 31.5
Carub.0004s1446 Capsella rubella HOM05D007309 ORTHO05D015909 3.8e-27 127.1 419 28.9
AL4G19130 Arabidopsis lyrata HOM05D007309 ORTHO05D010099 1.4e-26 125.2 200 40.0
BcaC03g12958 Brassica carinata HOM05D017478 ORTHO05D021594 1.6e-25 121.7 60 98.3
BcaC03g12962 Brassica carinata HOM05D017478 ORTHO05D021594 1.6e-25 121.7 60 98.3
C02p01740 Brassica napus HOM05D017478 ORTHO05D021594 1.6e-25 121.7 60 98.3
C02p01770 Brassica napus HOM05D017478 ORTHO05D021594 1.6e-25 121.7 60 98.3
BcaC03g12985 Brassica carinata HOM05D017478 ORTHO05D021594 1.0e-24 119.0 60 96.7
Carub.0004s1897 Capsella rubella HOM05D007309 ORTHO05D015909 1.0e-24 119.0 397 27.0
C02p01490 Brassica napus HOM05D017478 ORTHO05D021594 3.0e-24 117.5 60 95.0
C04p58600 Brassica napus HOM05D007309 ORTHO05D010099 5.1e-24 116.7 176 39.2
BolC4t27378H Brassica oleracea HOM05D007309 ORTHO05D010099 8.8e-24 115.9 176 38.6
C03p38220 Brassica napus HOM05D007309 ORTHO05D032970 5.7e-23 113.2 101 57.4
AL4G34290 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 3.7e-22 110.5 359 30.1
BolC1t01104H Brassica oleracea HOM05D007309 ORTHO05D010099 3.7e-22 110.5 266 36.1
AL4G33320 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 6.3e-22 109.8 370 26.5
C02p01410 Brassica napus HOM05D007309 ORTHO05D010099 8.2e-22 109.4 139 50.4
BraA02t04778Z Brassica rapa HOM05D007309 ORTHO05D010099 1.8e-21 108.2 91 65.9
C01p11350 Brassica napus HOM05D007309 ORTHO05D010099 3.1e-21 107.5 261 35.2
BolC3t16103H Brassica oleracea HOM05D007309 ORTHO05D032970 1.2e-20 105.5 109 50.5
BraA09t38661Z Brassica rapa HOM05D007309 ORTHO05D010099 4.5e-20 103.6 195 32.8
C02p01280 Brassica napus HOM05D007309 ORTHO05D010099 1.7e-19 101.7 80 65.0
BcaC01g05143 Brassica carinata HOM05D007309 ORTHO05D031751 5.5e-18 96.7 192 35.9
C02p01680 Brassica napus HOM05D007309 ORTHO05D014840 1.0e-16 92.4 160 39.4
BcaNung05912 Brassica carinata HOM05D007309 ORTHO05D010099 1.5e-15 88.6 115 43.5
C02p01690 Brassica napus HOM05D007309 ORTHO05D010099 2.0e-15 88.2 133 41.4
BcaB05g21782 Brassica carinata HOM05D007309 ORTHO05D010099 3.3e-15 87.4 89 55.1
AL6G13250 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 9.7e-15 85.9 83 61.4
BolC2t06144H Brassica oleracea HOM05D007309 ORTHO05D027345 1.3e-14 85.5 181 37.0
C02p01350 Brassica napus HOM05D007309 ORTHO05D010099 1.7e-14 85.1 72 59.7
AL4G34570 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 2.2e-14 84.7 195 34.4
BolC2t06136H Brassica oleracea HOM05D007309 ORTHO05D010099 3.7e-14 84.0 47 78.7
AL5G13790 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 8.2e-14 82.8 167 31.7
AT5G03720 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 5.3e-13 80.1 82 58.5
BcaC01g06784 Brassica carinata HOM05D007309 ORTHO05D032970 7.0e-13 79.7 75 54.7
Sp6g39000 Schrenkiella parvula HOM05D000123 ORTHO05D000064 1.2e-12 79.0 81 59.3
Carub.0006s0264 Capsella rubella HOM05D000123 ORTHO05D000064 1.5e-12 78.6 71 62.0
CARHR209580 Cardamine hirsuta HOM05D000123 ORTHO05D000064 2.6e-12 77.8 91 53.8
BcaB05g21774 Brassica carinata HOM05D007309 ORTHO05D010099 1.3e-11 75.5 64 60.9
Thhalv10013758m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 1.7e-11 75.1 71 63.4
AL4G19150 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 2.2e-11 74.7 177 31.1
AL9U11090 Arabidopsis lyrata HOM05D007309 ORTHO05D014840 2.2e-11 74.7 177 31.1
BcaC03g12990 Brassica carinata HOM05D017478 ORTHO05D092415 6.5e-11 73.2 39 84.6
A10p32380 Brassica napus HOM05D000123 ORTHO05D000064 1.5e-10 72.0 69 63.8
C09p73200 Brassica napus HOM05D000123 ORTHO05D000064 1.5e-10 72.0 69 63.8
BolC9t60055H Brassica oleracea HOM05D000123 ORTHO05D000064 1.5e-10 72.0 69 63.8
BraA10t45278Z Brassica rapa HOM05D000123 ORTHO05D000064 1.5e-10 72.0 69 63.8
AL4G33400 Arabidopsis lyrata HOM05D007309 ORTHO05D015909 7.2e-10 69.7 348 24.7
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 1.2e-09 68.9 62 51.6
BcaC06g32079 Brassica carinata HOM05D000123 ORTHO05D000064 2.1e-09 68.2 82 57.3
A05p24100 Brassica napus HOM05D000075 ORTHO05D014840 4.0e-08 63.9 162 35.2
BraA05t21290Z Brassica rapa HOM05D000075 ORTHO05D014840 4.0e-08 63.9 162 35.2
BcaB05g22427 Brassica carinata HOM05D007309 ORTHO05D093831 5.2e-08 63.5 134 36.6
A04p22450 Brassica napus HOM05D000075 ORTHO05D014840 2.6e-07 61.2 154 31.2
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 2.2e-06 58.2 193 26.4
AUR62002684 Chenopodium quinoa HOM05D001456 ORTHO05D002799 2.8e-06 57.8 168 29.8
C02p01400 Brassica napus HOM05D007309 ORTHO05D010099 6.3e-06 56.6 28 85.7
C07p13270 Brassica napus HOM05D023794 ORTHO05D028264 6.3e-06 56.6 167 28.7
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 6.3e-06 56.6 119 29.4


User provided reference genes

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