Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g12938 Brassica carinata HOM05D000529 ORTHO05D024430 1.7e-35 152.1 76 100.0
BcaB05g21752 Brassica carinata HOM05D000529 ORTHO05D000472 6.6e-24 113.6 57 98.2
CARHR208570 Cardamine hirsuta HOM05D000529 ORTHO05D000472 3.5e-17 91.3 59 71.2
BcaB05g21751 Brassica carinata HOM05D000529 ORTHO05D000472 6.0e-17 90.5 50 84.0
Sp6g38100 Schrenkiella parvula HOM05D000529 ORTHO05D000472 9.5e-15 83.2 51 72.5
Thhalv10012720m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.6e-14 82.4 51 72.5
Carub.0006s0361 Capsella rubella HOM05D000529 ORTHO05D000472 4.0e-13 77.8 51 70.6
A10p31440 Brassica napus HOM05D000529 ORTHO05D000472 5.2e-13 77.4 51 66.7
C09p72120 Brassica napus HOM05D000529 ORTHO05D000472 5.2e-13 77.4 51 66.7
BolC9t59956H Brassica oleracea HOM05D000529 ORTHO05D000472 5.2e-13 77.4 51 66.7
BraA10t45190Z Brassica rapa HOM05D000529 ORTHO05D000472 5.2e-13 77.4 51 66.7
AL6G14380 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 6.8e-13 77.0 51 70.6
BcaC06g32180 Brassica carinata HOM05D000529 ORTHO05D000472 8.9e-13 76.6 51 66.7
Carub.0008s0047 Capsella rubella HOM05D000101 ORTHO05D000472 7.6e-12 73.6 53 64.2
AL7G18240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 9.9e-12 73.2 49 67.3
AT4G33300 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 9.9e-12 73.2 49 67.3
CARHR241370 Cardamine hirsuta HOM05D000529 ORTHO05D000472 2.2e-11 72.0 49 65.3
BcaB03g13136 Brassica carinata HOM05D000529 ORTHO05D000472 2.9e-11 71.6 51 64.7
Carub.0007s0717 Capsella rubella HOM05D000529 ORTHO05D000472 2.9e-11 71.6 49 65.3
AT5G04720 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 3.8e-11 71.2 51 64.7
Aa31LG11G5570 Aethionema arabicum HOM05D000529 ORTHO05D000472 4.9e-11 70.9 51 58.8
Carub.0008s0668 Capsella rubella HOM05D000529 ORTHO05D000472 4.9e-11 70.9 44 70.5
Carub.0008s0669 Capsella rubella HOM05D000529 ORTHO05D000472 4.9e-11 70.9 44 70.5
BcaC09g52148 Brassica carinata HOM05D000529 ORTHO05D000472 1.1e-10 69.7 45 66.7
C01p05330 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-10 69.7 45 66.7
Thhalv10024421m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.1e-10 69.7 45 66.7
Sp7g31030 Schrenkiella parvula HOM05D000529 ORTHO05D000472 1.1e-10 69.7 45 66.7
Aa31LG7G9260 Aethionema arabicum HOM05D000529 ORTHO05D000472 1.4e-10 69.3 46 63.0
BcaB03g12806 Brassica carinata HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
BcaC01g00997 Brassica carinata HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
A08p17700 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
C03p86760 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
BolC3t20969H Brassica oleracea HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
BraA08t33720Z Brassica rapa HOM05D000529 ORTHO05D000472 1.4e-10 69.3 45 66.7
AT5G47280 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 4.1e-10 67.8 53 60.4
BraA01t00475Z Brassica rapa HOM05D000529 ORTHO05D000472 4.1e-10 67.8 50 60.0
BcaC09g52139 Brassica carinata HOM05D000529 ORTHO05D000472 7.1e-10 67.0 50 58.0
A01p04930 Brassica napus HOM05D000529 ORTHO05D000472 7.1e-10 67.0 50 58.0
AL1G47950 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 2.1e-09 65.5 51 52.9
AT1G33560 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.7e-09 65.1 51 54.9
CARHR033040 Cardamine hirsuta HOM05D000529 ORTHO05D024430 6.0e-09 63.9 97 38.1
AUR62033886 Chenopodium quinoa HOM05D000529 ORTHO05D000472 2.3e-08 62.0 50 54.0
BcaC05g26942 Brassica carinata HOM05D000529 ORTHO05D000472 3.9e-08 61.2 50 56.0
C05p27900 Brassica napus HOM05D000529 ORTHO05D000472 3.9e-08 61.2 50 56.0
BolC5t31516H Brassica oleracea HOM05D000529 ORTHO05D000472 3.9e-08 61.2 50 56.0
Carub.0001s3174 Capsella rubella HOM05D000529 ORTHO05D000472 8.7e-08 60.1 54 48.1
Oeu009568.1 Olea europaea HOM05D000529 ORTHO05D000472 8.7e-08 60.1 48 50.0
arahy.Tifrunner.gnm1.ann1.MR8NY8 Arachis hypogaea HOM05D000529 ORTHO05D000472 1.5e-07 59.3 60 50.0
THA.LOC104803687 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.5e-07 59.3 50 54.0
PGSC0003DMG400007999 Solanum tuberosum HOM05D000529 ORTHO05D000472 2.5e-07 58.5 40 57.5
BcaC07g38696 Brassica carinata HOM05D000529 ORTHO05D024430 5.6e-07 57.4 37 75.7
CAN.G371.66 Capsicum annuum HOM05D000529 ORTHO05D000472 5.6e-07 57.4 40 55.0
Nitab4.5_0000068g0290 Nicotiana tabacum HOM05D000529 ORTHO05D000472 7.3e-07 57.0 45 51.1
Ah.05g178400 Amaranthus hybridus HOM05D000529 ORTHO05D000472 9.6e-07 56.6 44 52.3
Solyc04g079420.3 Solanum lycopersicum HOM05D000529 ORTHO05D000472 9.6e-07 56.6 40 55.0
Sopen04g033030 Solanum pennellii HOM05D000529 ORTHO05D000472 9.6e-07 56.6 40 55.0
Peaxi162Scf01092g00129 Petunia axillaris HOM05D000529 ORTHO05D000472 1.6e-06 55.8 40 52.5
Aqoxy5G01761_Aqoxy5G01762 Aquilegia oxysepala HOM05D000529 ORTHO05D000472 2.1e-06 55.5 45 51.1
GSVIVG01009576001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.1e-06 55.5 44 54.5
MSTRG.1325 Avicennia marina HOM05D000529 ORTHO05D000472 8.1e-06 53.5 50 48.0
FAN14G2274 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.1e-06 53.5 62 41.9


User provided reference genes

Program Settings