Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.6e-166 589.3 295 100.0
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 1.5e-164 582.8 295 99.0
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 3.7e-163 578.2 296 98.6
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 4.2e-159 564.7 297 96.0
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 1.7e-155 552.7 320 89.4
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.0e-141 506.9 300 87.7
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.2e-134 483.4 300 83.3
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 2.8e-131 472.2 301 80.1
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 7.2e-127 457.6 293 79.2
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.0e-125 453.8 284 81.3
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 7.7e-121 437.6 298 78.5
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 3.3e-111 405.6 298 71.8
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 7.8e-105 384.4 288 67.4
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.5e-103 377.5 225 78.7
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 9.5e-103 377.5 231 77.9
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 2.1e-102 376.3 287 66.9
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 2.1e-102 376.3 225 79.1
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.6e-102 375.6 253 73.5
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 4.7e-102 375.2 249 73.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.2e-102 374.8 257 72.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 8.0e-102 374.4 237 75.9
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 8.0e-102 374.4 259 72.2
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 8.0e-102 374.4 259 71.8
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 8.0e-102 374.4 234 76.5
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.1e-101 374.0 259 71.4
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 1.8e-101 373.2 223 77.6
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.8e-101 373.2 248 74.2
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 4.0e-101 372.1 264 71.2
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 5.2e-101 371.7 286 66.1
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 5.2e-101 371.7 294 66.0
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 8.9e-101 370.9 286 65.4
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 8.9e-101 370.9 240 74.2
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.2e-100 370.5 283 67.5
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.2e-100 370.5 290 66.6
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 1.2e-100 370.5 285 65.6
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 1.5e-100 370.2 248 69.8
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 2.6e-100 369.4 276 65.6
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 3.4e-100 369.0 281 66.9
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 3.4e-100 369.0 286 66.4
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 4.4e-100 368.6 225 78.7
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 5.8e-100 368.2 236 75.4
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 5.8e-100 368.2 283 64.7
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 7.5e-100 367.9 240 74.2
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 7.5e-100 367.9 279 67.0
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 1.7e-99 366.7 225 76.0
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 2.2e-99 366.3 276 65.2
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 2.2e-99 366.3 262 69.5
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 2.2e-99 366.3 288 63.2
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 6.4e-99 364.8 281 66.5
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 6.4e-99 364.8 295 63.4
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 8.3e-99 364.4 231 73.6
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 8.3e-99 364.4 261 69.0
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 1.1e-98 364.0 291 65.6
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.1e-98 364.0 284 65.8
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 1.4e-98 363.6 276 64.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 3.2e-98 362.5 236 72.5
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 5.4e-98 361.7 283 63.6
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.2e-98 360.9 224 76.8
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.6e-97 360.1 271 65.7
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 2.1e-97 359.8 221 75.1
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 3.5e-97 359.0 251 70.9
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 7.8e-97 357.8 240 70.8
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.7e-96 356.7 237 70.9
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.1e-95 354.0 262 66.4
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 1.9e-95 353.2 240 69.6
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 4.3e-95 352.1 249 72.3
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 4.3e-95 352.1 235 71.1
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 7.3e-95 351.3 287 62.4
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 4.7e-94 348.6 241 69.3
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 6.2e-94 348.2 228 71.1
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 8.1e-94 347.8 255 66.3
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 8.1e-94 347.8 226 73.9
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 2.3e-93 346.3 241 67.2
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 4.0e-93 345.5 225 72.4
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 4.0e-93 345.5 238 70.6
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 1.2e-92 344.0 235 70.2
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 2.6e-92 342.8 280 62.9
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 5.8e-92 341.7 240 69.2
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.8e-92 341.7 223 70.0
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.3e-91 340.5 229 72.1
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 1.4e-90 337.0 292 61.6
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.9e-90 336.7 235 68.9
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 6.0e-89 331.6 262 61.5
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 6.0e-89 331.6 284 60.2
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 7.8e-89 331.3 288 59.7
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 7.8e-89 331.3 275 60.4
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.3e-88 330.5 288 59.4
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.3e-88 329.7 272 58.8
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 8.6e-88 327.8 272 59.2
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.5e-87 326.2 244 65.2
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 6.2e-86 321.6 226 68.1
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 5.8e-84 315.1 225 68.0
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 4.2e-82 308.9 276 58.3
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 4.2e-82 308.9 221 64.7
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 5.4e-82 308.5 226 65.0
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 9.2e-82 307.8 243 63.8
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 2.7e-81 306.2 267 58.1
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.5e-81 305.8 234 64.5
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.5e-81 305.8 258 61.2
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 5.6e-79 298.5 226 63.7
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.2e-78 297.4 277 57.0
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 3.6e-78 295.8 252 60.7
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 3.6e-78 295.8 176 79.0
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 1.4e-77 293.9 252 60.3
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 1.8e-77 293.5 270 54.8
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.5e-76 290.4 236 56.8
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 2.2e-75 286.6 238 60.5
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 2.1e-73 280.0 241 58.1
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 8.7e-72 274.6 238 63.4
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.9e-71 273.5 167 77.2
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 3.3e-71 272.7 176 74.4
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 1.1e-69 267.7 240 57.1
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 2.4e-69 266.5 243 55.1
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 3.4e-68 262.7 222 55.9
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.9e-68 261.2 167 74.9
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 3.0e-64 249.6 165 71.5
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 5.6e-63 245.4 193 69.9
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 1.2e-57 227.6 164 66.5
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.2e-52 211.1 152 67.1
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 2.9e-51 206.5 135 68.1
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.7e-49 199.9 188 58.0
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.9e-47 193.7 242 44.2
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 1.3e-43 181.0 138 60.9
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 3.8e-43 179.5 133 65.4
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 8.5e-43 178.3 205 44.9
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.2e-41 174.5 134 59.7
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.3e-40 170.2 243 46.9
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 8.8e-40 168.3 196 52.0
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.1e-29 133.3 91 68.1
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 3.8e-27 126.3 131 54.2
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.4e-21 107.1 90 56.7
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 2.0e-20 104.0 146 44.5
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-20 103.2 127 47.2
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 1.9e-18 97.4 124 48.4
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.0e-15 87.4 82 53.7
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 3.4e-15 86.7 119 39.5
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 1.0e-08 65.1 77 48.1
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.4e-07 60.1 67 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.7e-06 57.8 63 41.3
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 2.2e-06 57.4 84 34.5
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 4.8e-06 56.2 60 40.0


User provided reference genes

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