Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 5.6e-147 524.2 263 100.0
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 7.4e-99 364.4 258 75.6
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 1.8e-97 359.8 260 74.2
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 2.6e-96 355.9 268 73.5
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 1.2e-88 330.5 242 75.2
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 1.8e-84 316.6 284 63.4
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 2.0e-75 286.6 282 58.5
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 5.7e-75 285.0 275 61.1
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 2.8e-74 282.7 275 61.5
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 5.4e-73 278.5 245 62.4
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 5.5e-70 268.5 253 58.5
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 3.4e-59 232.6 278 50.7
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 1.4e-49 200.7 256 45.3
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 2.4e-49 199.9 247 47.0
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 7.0e-49 198.4 203 51.7
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 7.0e-49 198.4 250 44.4
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 2.0e-48 196.8 250 46.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.6e-48 195.7 214 50.9
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 7.8e-48 194.9 192 53.6
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 1.0e-47 194.5 198 52.0
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 3.9e-47 192.6 270 43.7
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 1.5e-46 190.7 218 50.5
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 4.3e-46 189.1 207 50.7
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 5.6e-46 188.7 200 50.5
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 9.5e-46 188.0 259 44.4
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.2e-45 187.6 200 50.0
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 1.2e-45 187.6 210 49.0
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.2e-45 187.6 273 42.9
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 4.7e-45 185.7 206 50.0
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.8e-44 183.7 202 49.5
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.5e-43 180.6 202 47.0
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 2.0e-43 180.3 196 44.9
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 2.0e-43 180.3 196 44.9
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 2.6e-43 179.9 187 49.7
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 5.8e-43 178.7 201 51.2
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 1.3e-42 177.6 217 43.8
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 1.7e-42 177.2 218 47.7
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 8.3e-42 174.9 237 42.6
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 4.1e-41 172.6 209 44.5
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 5.4e-41 172.2 271 42.4
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.2e-40 171.0 184 57.6
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.6e-40 170.6 180 58.9
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 2.1e-40 170.2 215 44.7
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 7.8e-40 168.3 201 46.3
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 1.0e-39 167.9 200 46.5
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 1.3e-39 167.5 271 39.5
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 5.1e-39 165.6 190 47.9
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 3.3e-38 162.9 271 39.1
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 3.3e-38 162.9 282 38.3
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 4.3e-38 162.5 186 48.4
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 1.4e-36 157.5 214 45.3
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 3.1e-36 156.4 194 45.4
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 4.0e-36 156.0 194 45.4
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 6.8e-36 155.2 225 41.3
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 3.4e-35 152.9 204 43.6
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 2.9e-34 149.8 201 43.8
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.1e-33 147.9 194 43.3
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 1.4e-33 147.5 195 40.0
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.4e-33 147.5 278 37.8
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 9.2e-33 144.8 191 42.4
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 2.7e-32 143.3 193 43.5
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 3.5e-32 142.9 224 41.1
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.6e-32 142.5 214 40.2
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 5.1e-31 139.0 196 42.9
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 1.9e-30 137.1 208 39.4
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 4.3e-30 136.0 195 39.5
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 6.9e-28 128.6 220 41.4
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 2.0e-27 127.1 192 41.7
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 7.6e-27 125.2 257 36.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.4e-25 120.9 110 52.7
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 7.3e-22 108.6 176 36.9
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 7.3e-22 108.6 195 35.9
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 6.4e-18 95.5 154 43.5
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 4.2e-17 92.8 173 36.4
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 5.4e-17 92.4 307 26.7
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 1.8e-15 87.4 88 51.1
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 5.8e-11 72.4 64 51.6
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 7.6e-11 72.0 123 42.3
MCO04G095 Micromonas commoda HOM05D002798 ORTHO05D003052 2.3e-07 60.5 59 42.4
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 1.1e-06 58.2 64 48.4
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-06 57.8 56 42.9
Eucgr.B01111 Eucalyptus grandis HOM05D001689 ORTHO05D001643 1.9e-06 57.4 125 32.8
MCO15G162 Micromonas commoda HOM05D007775 ORTHO05D009858 1.9e-06 57.4 61 37.7
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 1.9e-06 57.4 154 34.4
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 7.4e-06 55.5 74 39.2


User provided reference genes

Program Settings