Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 1.8e-56 222.2 102 100.0
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 6.8e-16 87.4 49 83.7
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 1.3e-14 83.2 49 79.6
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 2.9e-14 82.0 49 77.6
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 2.9e-14 82.0 49 77.6
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 2.9e-14 82.0 49 77.6
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 2.9e-14 82.0 49 77.6
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 2.9e-14 82.0 49 75.5
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 3.7e-14 81.6 49 75.5
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 3.7e-14 81.6 49 75.5
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 6.4e-14 80.9 49 75.5
A03p23210 Brassica napus HOM05D008360 ORTHO05D010532 1.4e-13 79.7 42 85.7
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 1.8e-13 79.3 49 73.5
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 1.8e-13 79.3 49 73.5
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 2.7e-12 75.5 49 71.4
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 1.0e-11 73.6 49 65.3
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 8.6e-11 70.5 48 60.4
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.1e-10 70.1 49 61.2
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 1.5e-10 69.7 49 63.3
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 2.5e-10 68.9 49 63.3
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 2.5e-10 68.9 49 63.3
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 2.5e-10 68.9 49 63.3
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 3.3e-10 68.6 49 59.2
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 5.6e-10 67.8 49 57.1
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 5.6e-10 67.8 49 61.2
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 7.3e-10 67.4 47 61.7
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 7.3e-10 67.4 48 64.6
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 7.3e-10 67.4 53 54.7
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 9.5e-10 67.0 49 59.2
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 9.5e-10 67.0 49 61.2
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 9.5e-10 67.0 49 61.2
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 1.2e-09 66.6 47 59.6
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 2.1e-09 65.9 49 59.2
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 3.6e-09 65.1 47 55.3
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 4.7e-09 64.7 46 56.5
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 4.7e-09 64.7 47 57.4
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 4.7e-09 64.7 47 55.3
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 6.2e-09 64.3 49 57.1
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 6.2e-09 64.3 49 57.1
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 3.1e-08 62.0 46 56.5
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 4.0e-08 61.6 47 57.4
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 4.0e-08 61.6 47 51.1
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 8.9e-08 60.5 49 51.0
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.2e-07 60.1 49 57.1
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 2.6e-07 58.9 46 56.5
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 4.4e-07 58.2 49 51.0
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 4.4e-07 58.2 50 60.0
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 7.5e-07 57.4 47 44.7
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 7.5e-07 57.4 47 44.7
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 1.3e-06 56.6 46 50.0
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 1.7e-06 56.2 45 51.1


User provided reference genes

Program Settings