Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 8.2e-70 266.9 133 100.0
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-70 266.9 133 100.0
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-70 266.9 133 100.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.8e-69 265.8 133 99.2
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.4e-66 256.1 133 96.2
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 8.7e-64 246.9 136 92.6
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 2.5e-63 245.4 133 94.0
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 7.4e-63 243.8 136 89.0
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.6e-60 235.3 134 88.1
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 2.6e-60 235.3 136 89.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.7e-60 233.8 134 88.8
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 4.2e-58 228.0 134 85.1
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.4e-56 223.0 139 81.3
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 5.7e-55 217.6 130 82.3
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.6e-52 208.8 134 82.1
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 3.7e-46 188.3 129 73.6
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.4e-45 186.4 136 69.1
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.4e-45 186.4 136 69.1
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.7e-39 164.5 116 70.7
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 7.4e-39 164.1 132 60.6
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 7.0e-37 157.5 103 78.6
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 7.0e-37 157.5 103 78.6
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.6e-36 156.4 130 60.8
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.5e-36 155.2 130 59.2
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 7.7e-36 154.1 138 58.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.7e-35 152.9 133 59.4
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 6.5e-35 151.0 132 54.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 8.5e-35 150.6 97 81.4
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 8.5e-35 150.6 133 57.1
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.5e-34 149.8 133 57.1
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.5e-34 149.8 129 59.7
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.5e-34 149.8 133 58.6
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.5e-34 149.8 134 58.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.9e-34 149.4 131 56.5
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.9e-34 149.4 139 55.4
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 2.5e-34 149.1 130 56.9
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.5e-34 149.1 133 57.9
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 7.2e-34 147.5 132 59.1
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.1e-33 146.0 133 54.1
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 4.7e-33 144.8 134 59.0
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 4.7e-33 144.8 130 56.2
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.0e-33 144.1 125 57.6
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 8.0e-33 144.1 138 54.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 1.4e-32 143.3 143 54.5
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 2.3e-32 142.5 137 54.0
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 3.0e-32 142.1 133 60.9
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.8e-32 140.6 133 54.1
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.6e-31 139.0 139 53.2
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.4e-31 138.7 132 56.1
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 3.4e-31 138.7 144 52.8
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 3.4e-31 138.7 129 55.0
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 7.5e-31 137.5 131 54.2
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.3e-30 136.7 139 53.2
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.7e-30 136.3 121 53.7
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 2.2e-30 136.0 131 54.2
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 4.8e-30 134.8 139 52.5
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.8e-30 134.8 131 50.4
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.8e-30 134.8 131 50.4
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 4.8e-30 134.8 134 53.7
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 6.3e-30 134.4 137 53.3
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.4e-29 133.3 123 56.9
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.4e-29 133.3 123 56.9
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.4e-29 133.3 130 54.6
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 5.3e-29 131.3 115 59.1
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 5.3e-29 131.3 129 51.9
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.2e-28 130.2 123 55.3
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.2e-28 130.2 127 52.0
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-28 129.8 137 52.6
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.6e-28 129.8 129 55.0
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.6e-28 129.8 135 54.1
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 1.6e-28 129.8 130 53.1
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.9e-28 127.9 133 51.9
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.9e-28 127.9 133 51.1
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.0e-27 127.1 131 51.1
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.8e-27 125.2 138 51.4
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 5.0e-27 124.8 112 57.1
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 5.0e-27 124.8 122 56.6
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 6.5e-27 124.4 117 53.8
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 8.5e-27 124.0 114 56.1
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.5e-26 122.5 133 51.1
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 4.2e-26 121.7 138 50.7
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 9.4e-26 120.6 129 46.5
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.2e-25 120.2 118 54.2
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.6e-25 119.8 124 47.6
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.1e-25 119.4 119 53.8
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 4.7e-25 118.2 148 48.0
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.4e-24 116.7 113 54.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.3e-24 115.9 130 50.0
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.3e-24 115.9 116 56.9
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 3.0e-24 115.5 115 51.3
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.0e-24 115.5 113 56.6
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.2e-24 114.8 129 45.7
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 5.2e-24 114.8 124 50.0
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.2e-23 113.6 116 51.7
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 2.6e-23 112.5 122 49.2
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 3.4e-23 112.1 106 54.7
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 5.7e-23 111.3 113 50.4
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 7.5e-23 110.9 111 48.6
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 7.5e-23 110.9 115 53.9
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 7.5e-23 110.9 111 47.7
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.7e-22 109.8 114 51.8
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 2.2e-22 109.4 117 48.7
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.2e-22 109.4 71 71.8
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.8e-22 109.0 97 56.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 2.8e-22 109.0 108 53.7
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.1e-21 107.1 136 44.1
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.1e-21 107.1 118 47.5
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.8e-21 106.3 107 53.3
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 2.4e-21 105.9 125 47.2
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 2.4e-21 105.9 80 61.2
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 2.4e-21 105.9 95 56.8
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 3.1e-21 105.5 119 48.7
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.0e-20 102.8 203 36.9
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.5e-20 101.7 65 73.8
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 4.5e-20 101.7 137 40.1
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 5.9e-20 101.3 133 43.6
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.0e-19 100.5 98 53.1
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.3e-19 100.1 120 45.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 2.3e-19 99.4 104 50.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 6.6e-19 97.8 67 65.7
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.5e-18 95.9 117 48.7
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 5.5e-18 94.7 108 49.1
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 5.5e-18 94.7 143 39.2
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 7.2e-18 94.4 126 41.3
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 4.7e-17 91.7 58 69.0
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.8e-16 89.7 140 40.7
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 4.0e-16 88.6 56 67.9
BraA05t19187Z Brassica rapa HOM05D015100 ORTHO05D005488 2.6e-15 85.9 98 54.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.4e-15 85.5 105 47.6
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 4.4e-15 85.1 63 76.2
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 7.5e-15 84.3 63 74.6
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 9.8e-15 84.0 63 74.6
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 1.3e-14 83.6 63 74.6
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 4.9e-14 81.6 63 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.1e-13 80.5 124 32.3
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.4e-13 80.1 111 42.3
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 2.7e-12 75.9 52 59.6
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.9e-11 72.0 44 72.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.9e-11 72.0 51 56.9
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 4.4e-07 58.5 66 59.1
BolC3t15102H Brassica oleracea HOM05D015100 ORTHO05D031876 4.4e-07 58.5 66 59.1
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.4e-07 58.5 39 66.7
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 1.3e-06 57.0 68 55.9
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 2.2e-06 56.2 73 38.4


User provided reference genes

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