Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 2.8e-91 338.6 171 100.0
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-45 186.8 92 98.9
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-45 186.8 92 98.9
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 2.1e-38 162.9 107 82.2
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 2.1e-38 162.9 107 82.2
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 2.7e-25 119.4 65 90.8
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 6.0e-25 118.2 65 90.8
BolC5t34111H Brassica oleracea HOM05D004053 ORTHO05D018618 5.1e-24 115.2 62 90.3
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 2.0e-20 103.2 55 90.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.2e-19 99.8 67 73.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.9e-19 99.4 67 71.6
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.9e-18 96.7 67 70.1
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.2e-18 95.5 67 68.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.6e-17 93.6 67 65.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 6.0e-17 91.7 65 67.7
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 8.7e-16 87.8 58 75.9
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.5e-15 87.0 67 62.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 7.4e-15 84.7 57 77.2
A04p06740 Brassica napus HOM05D004053 ORTHO05D033555 1.6e-14 83.6 44 88.6
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-13 80.5 55 72.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-13 80.5 67 58.2
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 4.1e-13 79.0 65 63.1
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 4.1e-13 79.0 65 63.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 4.1e-13 79.0 65 63.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 4.1e-13 79.0 65 63.1
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 4.1e-13 79.0 65 63.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.4e-12 75.9 67 53.7
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.5e-12 75.5 63 57.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 5.8e-12 75.1 67 58.2
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-11 73.9 67 56.7
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-11 72.8 62 56.5
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.9e-11 72.8 67 55.2
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 6.5e-11 71.6 67 52.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 8.4e-11 71.2 85 47.1
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 8.4e-11 71.2 67 52.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.1e-10 70.9 67 53.7
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.1e-10 70.9 67 50.7
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.1e-10 70.9 68 51.5
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.1e-10 70.9 67 53.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.4e-10 70.5 67 55.2
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.9e-10 70.1 65 53.8
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 3.2e-10 69.3 67 52.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 3.2e-10 69.3 65 50.8
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.2e-10 69.3 68 51.5
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 3.2e-10 69.3 67 53.7
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.2e-10 68.9 67 52.2
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 4.2e-10 68.9 63 57.1
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 5.5e-10 68.6 85 45.9
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 7.1e-10 68.2 67 50.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 7.1e-10 68.2 67 49.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.2e-09 67.4 67 50.7
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.2e-09 67.4 65 52.3
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.2e-09 67.4 67 50.7
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.6e-09 67.0 65 49.2
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.1e-09 66.6 67 49.3
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.1e-09 66.6 67 50.7
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 53.7
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 53.7
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 49.3
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 49.3
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.7e-09 66.2 65 49.2
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 49.3
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 49.3
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 2.7e-09 66.2 67 49.3
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.5e-09 65.9 67 50.7
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 3.5e-09 65.9 67 52.2
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.6e-09 65.5 68 50.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.6e-09 65.5 68 48.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 6.1e-09 65.1 63 52.4
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 7.9e-09 64.7 67 47.8
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.9e-09 64.7 67 49.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 7.9e-09 64.7 67 49.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-08 64.3 67 49.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.0e-08 64.3 67 50.7
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.3e-08 63.9 65 47.7
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-08 63.9 65 47.7
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-08 63.9 65 47.7
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.3e-08 63.9 68 51.5
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.8e-08 63.5 67 47.8
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.3e-08 63.2 67 49.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.0e-08 62.8 65 47.7
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.0e-08 62.8 67 47.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.0e-08 62.8 67 46.3
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.0e-08 62.8 67 49.3
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 3.0e-08 62.8 67 49.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.1e-08 62.0 67 49.3
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.1e-08 62.0 59 50.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 6.7e-08 61.6 67 49.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.7e-08 61.2 85 44.7
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 8.7e-08 61.2 85 44.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.7e-08 61.2 67 46.3
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.1e-07 60.8 67 47.8
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.1e-07 60.8 85 36.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.5e-07 60.5 67 46.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.5e-07 60.5 65 46.2
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.9e-07 60.1 65 47.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.9e-07 60.1 68 50.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.9e-07 60.1 68 48.5
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.5e-07 59.7 64 50.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.5e-07 59.7 65 49.2
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.5e-07 59.7 67 44.8
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 4.3e-07 58.9 65 46.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 5.7e-07 58.5 64 46.9
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 5.7e-07 58.5 65 47.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 7.4e-07 58.2 65 44.6
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 9.7e-07 57.8 66 45.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 9.7e-07 57.8 64 46.9
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.3e-06 57.4 67 41.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.3e-06 57.4 65 46.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-06 57.4 67 44.8
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.3e-06 57.4 65 44.6
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.3e-06 57.4 67 44.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-06 57.0 67 44.8
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-06 57.0 67 44.8
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.6e-06 57.0 65 46.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.6e-06 57.0 67 44.8
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.6e-06 57.0 67 46.3
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.6e-06 57.0 67 44.8
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.2e-06 56.6 67 40.3
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.8e-06 56.2 59 45.8
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.8e-06 56.2 67 44.8
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 2.8e-06 56.2 67 44.8
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 3.7e-06 55.8 67 43.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.3e-06 55.1 85 40.0
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 6.3e-06 55.1 65 47.7


User provided reference genes

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