Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 1.6e-24 115.2 54 100.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 1.6e-24 115.2 54 100.0
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-24 114.8 54 98.1
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 2.1e-24 114.8 54 98.1
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 6.1e-24 113.2 54 96.3
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 2.8e-21 104.4 55 94.5
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 8.6e-18 92.8 56 82.1
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 8.6e-18 92.8 56 82.1
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.9e-17 91.7 56 82.1
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 3.3e-17 90.9 56 80.4
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 3.3e-17 90.9 56 80.4
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 5.5e-17 90.1 59 76.3
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 5.5e-17 90.1 59 76.3
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 5.5e-17 90.1 59 76.3
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 9.5e-17 89.4 46 91.3
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 2.1e-16 88.2 46 87.0
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 6.1e-16 86.7 54 77.8
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 1.4e-15 85.5 59 76.3
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 8.9e-15 82.8 46 82.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 8.9e-15 82.8 46 82.6
BcaC01g00581 Brassica carinata HOM05D007120 ORTHO05D008881 8.9e-15 82.8 54 75.9
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 3.4e-14 80.9 46 78.3
BolC1t02550H Brassica oleracea HOM05D015100 ORTHO05D005488 4.1e-12 73.9 35 100.0
BolC9t53790H Brassica oleracea HOM05D015100 ORTHO05D005488 4.1e-12 73.9 35 100.0
BcaC09g50389 Brassica carinata HOM05D015100 ORTHO05D005488 1.2e-11 72.4 35 97.1
BolC9t55552H Brassica oleracea HOM05D015100 ORTHO05D005488 1.2e-11 72.4 35 97.1
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.2e-11 72.4 42 64.3
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.2e-11 72.4 42 64.3
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 2.7e-11 71.2 43 74.4
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.7e-11 71.2 42 61.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.7e-11 71.2 46 60.9
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 3.5e-11 70.9 43 65.1
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 4.5e-11 70.5 45 66.7
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 5.9e-11 70.1 43 67.4
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 5.9e-11 70.1 56 58.9
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 7.8e-11 69.7 43 65.1
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 7.8e-11 69.7 42 66.7
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.0e-10 69.3 43 65.1
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.3e-10 68.9 43 65.1
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.3e-10 68.2 46 60.9
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.9e-10 67.4 46 63.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 3.9e-10 67.4 57 54.4
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.9e-10 67.4 43 67.4
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.9e-10 67.4 43 67.4
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 5.0e-10 67.0 46 60.9
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 5.0e-10 67.0 45 62.2
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 5.0e-10 67.0 40 62.5
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 6.6e-10 66.6 54 57.4
BolC1t01821H Brassica oleracea HOM05D015100 ORTHO05D005488 1.1e-09 65.9 34 94.1
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 1.9e-09 65.1 44 59.1
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.9e-09 65.1 51 52.9
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.5e-09 64.7 40 62.5
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.5e-09 64.7 40 65.0
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 2.5e-09 64.7 51 52.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 2.5e-09 64.7 49 61.2
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 3.3e-09 64.3 47 57.4
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 3.3e-09 64.3 43 62.8
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.3e-09 63.9 47 55.3
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 4.3e-09 63.9 51 49.0
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.3e-09 63.9 39 61.5
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 4.3e-09 63.9 51 52.9
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 5.6e-09 63.5 38 71.1
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.3e-09 63.2 51 51.0
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 7.3e-09 63.2 46 58.7
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 9.5e-09 62.8 53 58.5
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.2e-08 62.4 51 49.0
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.2e-08 62.4 51 51.0
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.6e-08 62.0 45 55.6
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.6e-08 62.0 50 52.0
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.1e-08 61.6 40 57.5
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 2.8e-08 61.2 41 61.0
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 3.6e-08 60.8 46 60.9
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 3.6e-08 60.8 40 65.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 3.6e-08 60.8 40 65.0
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 3.6e-08 60.8 40 65.0
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 4.7e-08 60.5 45 53.3
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 4.7e-08 60.5 46 60.9
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.7e-08 60.5 46 60.9
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.7e-08 60.5 46 60.9
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 4.7e-08 60.5 36 66.7
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 8.0e-08 59.7 43 55.8
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.8e-07 58.5 45 53.3
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.8e-07 58.5 46 54.3
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 2.3e-07 58.2 44 54.5
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 2.3e-07 58.2 35 65.7
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 3.1e-07 57.8 37 64.9
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.1e-07 57.8 43 53.5
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 5.2e-07 57.0 47 57.4
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 6.8e-07 56.6 40 62.5
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.5e-06 55.5 46 50.0
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 2.0e-06 55.1 36 61.1
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 2.6e-06 54.7 46 52.2
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 2.6e-06 54.7 51 47.1
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.4e-06 54.3 41 56.1


User provided reference genes

Program Settings