Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.0e-209 732.3 383 100.0
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.4e-175 619.8 393 85.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.4e-175 619.8 393 85.8
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 3.0e-173 612.1 392 84.9
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 8.7e-173 610.5 392 84.7
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 4.5e-161 571.6 388 78.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.8e-160 568.5 385 81.3
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 4.0e-154 548.5 388 77.1
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.8e-149 533.1 386 76.4
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.5e-145 518.5 410 70.2
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 5.0e-144 515.0 388 72.7
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 3.6e-134 482.3 346 76.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 4.6e-134 481.9 396 66.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 2.0e-121 439.9 372 65.1
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.3e-109 399.8 400 57.5
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 8.8e-109 397.9 403 56.8
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 9.8e-108 394.4 400 56.0
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.3e-107 394.0 402 55.7
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.3e-107 394.0 402 55.7
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 1.1e-106 391.0 409 53.8
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 4.1e-106 389.0 403 55.8
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.2e-103 379.0 392 55.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.2e-102 377.5 394 54.1
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.7e-102 376.3 393 53.7
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.7e-102 376.3 409 51.6
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.6e-102 375.9 416 52.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 8.0e-102 374.8 409 54.0
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.0e-101 374.4 401 53.9
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.8e-101 373.6 389 53.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.3e-101 373.2 416 51.9
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 3.0e-101 372.9 404 54.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.2e-100 370.9 405 52.3
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.5e-100 370.5 402 53.7
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.4e-100 369.4 406 51.2
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.4e-100 369.0 404 52.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 8.3e-99 364.8 409 50.9
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.1e-98 364.4 407 53.1
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.1e-98 362.5 389 52.2
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.6e-97 360.5 415 50.6
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.7e-97 359.8 388 53.1
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.5e-97 359.4 410 50.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 5.9e-97 358.6 392 51.3
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.0e-96 357.8 392 51.8
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.0e-96 355.5 405 52.8
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 8.6e-96 354.8 402 51.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.9e-95 353.6 391 52.4
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.6e-95 352.1 393 48.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.3e-95 351.7 405 51.6
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 7.3e-95 351.7 392 50.3
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 7.3e-95 351.7 410 50.2
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 2.1e-94 350.1 397 50.9
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.8e-94 349.7 382 51.6
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 8.0e-94 348.2 386 50.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 8.0e-94 348.2 379 52.2
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 2.3e-93 346.7 397 51.4
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 3.0e-93 346.3 417 51.1
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 5.2e-93 345.5 393 50.9
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 6.8e-93 345.1 396 52.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 6.8e-93 345.1 409 50.1
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.0e-92 343.6 388 51.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.6e-92 343.2 371 52.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.4e-92 342.8 402 50.0
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.7e-92 342.0 405 50.9
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.5e-92 341.7 372 52.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.3e-91 340.9 435 49.0
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-91 340.5 428 48.4
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.7e-91 340.5 437 47.6
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.7e-91 340.5 408 49.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.9e-91 339.7 410 49.5
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.9e-91 339.0 373 52.8
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.4e-91 338.6 408 49.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.4e-91 338.6 416 48.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 8.3e-91 338.2 374 51.6
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.4e-90 337.4 339 56.9
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.4e-90 336.7 398 49.5
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.1e-90 335.9 435 47.4
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 9.2e-90 334.7 395 50.4
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.6e-89 334.0 395 51.1
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.6e-89 332.4 393 49.4
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.0e-88 331.3 352 55.4
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.3e-88 330.9 380 50.5
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 6.6e-88 328.6 391 49.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.9e-87 327.0 357 53.2
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 2.5e-87 326.6 416 49.3
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.5e-87 326.6 412 49.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 5.6e-87 325.5 379 51.5
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.6e-86 323.9 409 47.7
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.1e-86 323.6 445 45.8
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.1e-85 319.7 395 46.8
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.0e-85 319.3 369 52.6
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 4.0e-85 319.3 394 47.0
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.5e-84 317.4 371 49.1
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.7e-83 313.9 359 51.8
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 8.3e-83 311.6 420 47.1
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.4e-82 310.8 384 48.4
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 4.1e-82 309.3 378 48.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.1e-82 309.3 388 49.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.0e-82 308.5 352 52.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.0e-80 303.1 414 47.6
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.4e-77 294.3 325 51.7
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.3e-77 293.5 499 39.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.2e-73 281.2 406 42.6
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 3.1e-69 266.5 425 39.1
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.2e-68 264.6 499 37.1
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.9e-64 249.6 375 46.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.6e-62 244.2 396 42.7
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 3.8e-59 233.0 390 40.3
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 8.4e-59 231.9 329 45.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 7.3e-55 218.8 290 46.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.8e-53 214.2 281 46.3
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.2e-52 211.5 318 40.6
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.5e-52 211.1 350 42.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.2e-49 201.4 237 50.2
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.3e-48 198.0 226 51.8
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 7.4e-47 192.2 320 38.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.3e-46 191.4 317 40.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.9e-43 180.3 211 53.6
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 7.4e-39 165.6 347 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.5e-34 150.6 301 36.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.8e-30 136.3 333 34.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.9e-26 124.4 158 48.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 4.2e-26 123.2 152 44.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 4.2e-26 123.2 152 44.7
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 8.7e-24 115.5 131 48.9
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-22 110.9 115 48.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 4.8e-22 109.8 104 54.8
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.4e-20 103.6 293 28.0
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 7.9e-17 92.4 42 90.5
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 3.9e-16 90.1 98 58.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.1e-16 89.7 148 45.9
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.1e-16 89.7 143 42.7
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 9.1e-13 79.0 53 71.7
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.5e-12 78.2 65 67.7
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.2e-10 70.5 72 54.2
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 9.4e-10 68.9 110 40.9
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.6e-09 68.2 115 43.5


User provided reference genes

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