Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 0.0e+00 1326.6 677 100.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 0.0e+00 1250.0 694 92.4
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 0.0e+00 1250.0 694 92.4
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 0.0e+00 1223.4 694 90.5
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 0.0e+00 1193.7 694 87.9
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 0.0e+00 1180.2 694 88.0
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 0.0e+00 1177.2 690 86.2
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 0.0e+00 1176.4 694 87.8
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 0.0e+00 1172.9 690 85.8
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 0.0e+00 1167.5 694 85.3
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 0.0e+00 1164.1 690 85.2
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 0.0e+00 1116.3 694 81.3
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 0.0e+00 1080.1 689 80.1
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.3e-304 1049.3 694 76.1
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 1.3e-301 1039.3 694 74.1
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 5.1e-301 1037.3 694 74.6
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 8.6e-301 1036.6 694 75.5
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 4.3e-300 1034.2 694 74.4
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 9.6e-300 1033.1 694 74.4
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 2.8e-299 1031.6 694 73.9
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 4.7e-299 1030.8 694 73.8
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.4e-295 1018.5 695 72.9
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 1.5e-292 1009.2 694 72.6
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 8.1e-291 1003.4 694 73.3
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.1e-290 1003.0 694 73.1
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.9e-288 995.0 694 72.2
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.9e-288 994.2 694 71.2
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 1.1e-287 993.0 694 72.2
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 1.4e-287 992.6 694 72.2
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 3.2e-287 991.5 694 72.0
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.6e-286 989.2 694 71.9
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.6e-286 989.2 694 72.0
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.7e-286 988.4 694 71.5
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 6.7e-285 983.8 660 73.6
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 6.7e-285 983.8 696 71.6
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 4.3e-284 981.1 694 71.3
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 7.4e-284 980.3 694 71.3
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 3.7e-283 978.0 694 70.9
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 1.1e-282 976.5 694 69.7
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 1.4e-282 976.1 694 70.9
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 1.8e-282 975.7 694 70.3
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.8e-282 975.7 694 69.9
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 2.4e-282 975.3 696 70.5
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 5.3e-282 974.2 694 70.6
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 2.0e-281 972.2 694 70.5
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 2.6e-281 971.8 689 71.3
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 2.2e-280 968.8 694 70.5
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 2.9e-280 968.4 694 70.2
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 4.9e-280 967.6 694 69.2
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.4e-279 966.1 694 70.3
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.9e-279 965.7 694 70.3
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 4.2e-279 964.5 701 72.9
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 7.1e-279 963.8 694 69.3
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 2.3e-277 958.7 694 69.3
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 1.5e-276 956.1 694 69.0
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 2.5e-276 955.3 660 71.5
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 4.3e-276 954.5 694 68.7
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 5.6e-276 954.1 689 69.4
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 4.8e-275 951.0 694 68.7
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 6.2e-275 950.7 661 71.1
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 7.6e-273 943.7 695 72.2
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 1.0e-272 943.3 700 68.6
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.7e-272 942.6 694 68.6
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.2e-272 942.2 660 69.8
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 4.2e-271 937.9 695 68.2
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 5.5e-271 937.6 694 68.2
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 7.1e-271 937.2 694 71.2
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 9.3e-271 936.8 695 68.2
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.6e-270 936.0 694 68.4
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 1.6e-270 936.0 694 68.3
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.7e-270 935.3 691 71.8
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 6.0e-270 934.1 694 68.2
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 7.9e-270 933.7 695 67.8
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.0e-269 933.3 695 67.8
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.0e-269 933.3 695 67.6
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 1.3e-269 932.9 694 67.6
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.8e-269 932.6 695 67.9
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.3e-269 932.2 660 71.1
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 2.3e-269 932.2 695 67.8
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.9e-269 931.4 695 67.8
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.5e-268 928.7 695 67.3
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 5.7e-268 927.5 694 70.0
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 5.7e-268 927.5 694 67.9
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 5.7e-268 927.5 695 67.3
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.6e-267 926.0 695 67.2
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.8e-267 925.2 660 70.6
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 2.0e-265 919.1 660 69.1
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.2e-264 915.6 655 69.2
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 2.9e-264 915.2 695 70.2
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 1.9e-263 912.5 660 69.4
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 1.0e-261 906.7 694 66.1
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.3e-261 906.4 662 68.1
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 4.3e-260 901.4 766 61.7
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.6e-259 899.4 740 64.7
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.2e-257 893.3 695 65.8
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 6.1e-254 880.9 660 67.0
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 5.1e-253 877.9 660 65.9
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 1.3e-251 873.2 692 63.0
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 4.5e-249 864.8 696 62.8
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 2.9e-248 862.1 698 62.8
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 3.8e-248 861.7 694 61.5
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 3.8e-248 861.7 696 62.5
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 3.0e-245 852.0 603 70.5
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 4.4e-244 848.2 694 58.6
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.8e-243 845.5 687 61.6
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 2.8e-243 845.5 687 61.6
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 3.7e-243 845.1 668 64.8
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 6.3e-243 844.3 663 65.6
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.6e-238 829.7 697 62.1
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 3.6e-238 828.6 691 60.3
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 1.4e-237 826.6 691 60.8
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 5.7e-236 821.2 686 60.6
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 7.0e-234 814.3 653 61.9
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 2.0e-233 812.8 663 64.1
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 1.3e-232 810.1 554 71.3
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 5.5e-231 804.7 706 58.5
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 4.2e-223 778.5 652 59.7
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.6e-222 776.5 653 59.6
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 5.2e-221 771.5 688 55.5
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 3.4e-220 768.8 555 67.6
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 3.5e-217 758.8 549 69.2
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 5.0e-208 728.4 660 57.4
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.1e-207 727.2 688 52.8
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 1.2e-201 707.2 706 51.1
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 6.0e-201 704.9 687 51.7
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 6.2e-198 694.9 698 51.1
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 8.1e-198 694.5 707 50.6
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.9e-194 683.3 621 56.7
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 1.6e-185 653.7 715 48.0
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 2.4e-162 576.6 591 54.1
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 2.1e-153 547.0 351 76.4
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 1.8e-152 543.9 544 51.5
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.6e-150 537.3 707 41.4
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 7.7e-148 528.5 481 58.2
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 7.7e-148 528.5 659 43.7
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 3.8e-147 526.2 415 63.6
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 9.4e-146 521.5 357 72.5
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 1.2e-145 521.2 527 59.0
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 2.1e-145 520.4 562 51.4
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.3e-144 516.9 585 52.3
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 8.8e-144 515.0 619 47.5
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 3.3e-143 513.1 635 42.7
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.1e-141 506.5 396 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 5.1e-136 489.2 446 55.8
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 4.4e-135 486.1 320 75.9
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 9.1e-133 478.4 674 39.2
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 2.2e-123 447.2 447 51.9
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.1e-122 444.9 452 53.5
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 3.0e-104 383.6 333 61.9
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 3.1e-101 373.6 632 41.6
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.5e-90 337.4 218 77.1
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 1.3e-86 325.1 250 66.4
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 7.0e-85 319.3 661 30.6
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 8.6e-75 285.8 197 70.1
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 3.3e-74 283.9 180 75.6
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 1.6e-73 281.6 193 72.5
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 1.5e-71 275.0 245 58.4
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 1.8e-56 224.9 188 62.2
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 2.9e-54 217.6 186 60.8
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 6.4e-54 216.5 182 66.5
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.1e-49 201.4 504 29.2
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 2.8e-49 201.1 245 49.8
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 2.1e-44 184.9 244 47.1
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 1.0e-43 182.6 118 72.9
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 3.1e-32 144.4 183 45.4
Prupe.2G190900 Prunus persica HOM05D003602 ORTHO05D004808 3.4e-31 141.0 172 47.7
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 2.9e-30 137.9 396 28.8
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 5.0e-30 137.1 104 65.4
C02p25670 Brassica napus HOM05D003602 ORTHO05D018547 2.1e-28 131.7 202 39.1
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 1.5e-26 125.6 128 52.3
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 4.3e-26 124.0 96 65.6
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 4.1e-24 117.5 99 57.6
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 1.5e-23 115.5 109 52.3
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 3.6e-20 104.4 75 66.7
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 8.8e-19 99.8 82 62.2
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 2.2e-17 95.1 106 50.0
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 3.5e-15 87.8 91 53.8
Lsat_1_v5_gn_2_108301 Lactuca sativa HOM05D003602 ORTHO05D004808 1.0e-14 86.3 203 32.0
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 1.6e-12 79.0 66 59.1
SEGI_28185 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 2.7e-12 78.2 65 53.8
AL3G34240 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 6.1e-12 77.0 127 35.4
FAN12G2779 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.6e-07 62.4 62 50.0
VMungo1309G3028 Vigna mungo HOM05D024188 ORTHO05D008631 2.9e-06 58.2 43 65.1


User provided reference genes

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