Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12680 Brassica carinata HOM05D010353 ORTHO05D011141 1.4e-93 346.3 170 100.0
C04p01390 Brassica napus HOM05D010353 ORTHO05D011141 1.4e-93 346.3 170 100.0
BolC4t21792H Brassica oleracea HOM05D010353 ORTHO05D011141 2.3e-93 345.5 170 99.4
A05p01240 Brassica napus HOM05D010353 ORTHO05D011141 1.3e-91 339.7 170 98.2
BraA05t19125Z Brassica rapa HOM05D010353 ORTHO05D011141 1.3e-91 339.7 170 98.2
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 1.8e-82 309.3 177 88.7
Sp4g28580 Schrenkiella parvula HOM05D010353 ORTHO05D011141 8.8e-77 290.4 171 87.1
BcaC02g07038 Brassica carinata HOM05D010353 ORTHO05D011141 2.7e-73 278.9 173 83.2
AL4G45960 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 2.2e-72 275.8 171 82.5
Thhalv10001658m.g Eutrema salsugineum HOM05D010353 ORTHO05D011141 1.9e-71 272.7 168 83.3
AT2G46535 Arabidopsis thaliana HOM05D010353 ORTHO05D011141 7.2e-71 270.8 171 80.1
BraA04t18902Z Brassica rapa HOM05D010353 ORTHO05D011141 5.2e-69 264.6 173 78.6
BcaB01g03204 Brassica carinata HOM05D010353 ORTHO05D011141 1.5e-68 263.1 169 80.5
CARHR141870 Cardamine hirsuta HOM05D010353 ORTHO05D011141 2.0e-68 262.7 171 79.5
Carub.0004s2925 Capsella rubella HOM05D010353 ORTHO05D011141 5.7e-68 261.2 179 78.2
C04p72210 Brassica napus HOM05D010353 ORTHO05D011141 7.5e-68 260.8 173 76.9
BolC4t28708H Brassica oleracea HOM05D010353 ORTHO05D011141 7.5e-68 260.8 173 77.5
Aa31LG1G27920 Aethionema arabicum HOM05D010353 ORTHO05D011141 8.0e-62 240.7 169 75.1
A04p34440 Brassica napus HOM05D010353 ORTHO05D011141 8.3e-59 230.7 148 81.1
BcaC02g07015 Brassica carinata HOM05D010353 ORTHO05D011141 4.0e-45 185.3 135 73.3
AL5G41110 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 3.6e-38 162.2 96 84.4
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 1.9e-31 139.8 180 49.4
AT3G61840 Arabidopsis thaliana HOM05D011689 ORTHO05D011141 2.8e-14 82.8 123 48.8
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 4.8e-14 82.0 248 30.2
C08p36670 Brassica napus HOM05D011689 ORTHO05D011141 8.1e-14 81.3 186 40.9
BolC8t51249H Brassica oleracea HOM05D011689 ORTHO05D011141 8.1e-14 81.3 186 40.9
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 2.4e-13 79.7 229 31.0
A09p53870 Brassica napus HOM05D011689 ORTHO05D011141 3.1e-13 79.3 187 40.6
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 5.3e-13 78.6 209 30.1
BcaC07g42597 Brassica carinata HOM05D011689 ORTHO05D011141 6.9e-13 78.2 186 40.3
AL5G44420 Arabidopsis lyrata HOM05D011689 ORTHO05D011141 3.4e-12 75.9 123 47.2
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 4.5e-12 75.5 209 33.0
Carub.0005s2858 Capsella rubella HOM05D011689 ORTHO05D011141 7.6e-12 74.7 126 42.1
CsaV3_6G008510 Cucumis sativus L. HOM05D002242 ORTHO05D002275 7.6e-12 74.7 164 32.9
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 7.6e-12 74.7 148 35.1
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 7.6e-12 74.7 198 31.8
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 7.6e-12 74.7 212 30.7
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 1.3e-11 73.9 193 30.6
Thhalv10006487m.g Eutrema salsugineum HOM05D011689 ORTHO05D011141 2.2e-11 73.2 158 44.3
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 2.9e-11 72.8 209 32.1
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 3.8e-11 72.4 237 29.1
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 4.9e-11 72.0 148 33.1
ClCG06G002630 Citrullus lanatus HOM05D002242 ORTHO05D002275 6.4e-11 71.6 179 31.3
Sp5g01530 Schrenkiella parvula HOM05D011689 ORTHO05D011141 8.4e-11 71.2 151 46.4
BraA09t40802Z Brassica rapa HOM05D011689 ORTHO05D011141 1.4e-10 70.5 181 39.2
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.9e-10 70.1 212 30.7
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 1.9e-10 70.1 195 31.8
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 2.4e-10 69.7 193 30.1
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 3.2e-10 69.3 200 30.5
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 4.2e-10 68.9 188 31.4
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 5.4e-10 68.6 227 30.4
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 7.1e-10 68.2 212 30.2
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 9.3e-10 67.8 182 30.8
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 1.2e-09 67.4 199 30.7
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 1.6e-09 67.0 236 27.5
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 1.6e-09 67.0 232 28.4
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.1e-09 66.6 212 31.1
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 2.7e-09 66.2 181 32.0
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 2.7e-09 66.2 205 29.8
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 3.5e-09 65.9 227 30.0
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 4.6e-09 65.5 214 31.3
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 4.6e-09 65.5 213 30.0
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 6.0e-09 65.1 182 30.2
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 7.9e-09 64.7 220 29.1
BcaC07g42612 Brassica carinata HOM05D011689 ORTHO05D011141 1.0e-08 64.3 145 42.1
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 1.0e-08 64.3 201 30.8
CARHR172170 Cardamine hirsuta HOM05D011689 ORTHO05D011141 1.0e-08 64.3 175 34.9
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 2.3e-08 63.2 202 30.7
Lalb_Chr18g0044551 Lupinus albus HOM05D002242 ORTHO05D002275 2.3e-08 63.2 168 32.7
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.0e-08 62.8 105 39.0
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 3.0e-08 62.8 220 27.7
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 3.0e-08 62.8 186 30.1
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 3.9e-08 62.4 211 32.7
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 3.9e-08 62.4 201 27.4
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 3.9e-08 62.4 195 32.3
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 5.1e-08 62.0 213 31.0
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 5.1e-08 62.0 210 31.4
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 6.7e-08 61.6 230 27.8
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 8.7e-08 61.2 205 31.2
ClCG05G000740 Citrullus lanatus HOM05D002242 ORTHO05D002275 1.1e-07 60.8 183 33.3
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 2.5e-07 59.7 125 38.4
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.5e-07 59.7 210 25.7
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 4.3e-07 58.9 168 33.3
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 4.3e-07 58.9 245 27.3
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 5.6e-07 58.5 193 28.5
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 5.6e-07 58.5 203 25.6
Sed0004473 Sechium edule HOM05D002242 ORTHO05D002275 5.6e-07 58.5 194 32.5
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 7.4e-07 58.2 210 31.0
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 7.4e-07 58.2 246 26.0
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 9.6e-07 57.8 240 29.2
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 9.6e-07 57.8 223 28.7
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 9.6e-07 57.8 213 29.1
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.3e-06 57.4 216 28.7
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 1.3e-06 57.4 166 31.3
VMungo0540G1854 Vigna mungo HOM05D002242 ORTHO05D002275 1.3e-06 57.4 172 29.1
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 1.6e-06 57.0 184 29.3
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 2.1e-06 56.6 169 29.6
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.1e-06 56.6 187 26.2
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 2.8e-06 56.2 200 28.5
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.8e-06 56.2 197 26.4
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.8e-06 56.2 211 25.6
BcaB05g22000 Brassica carinata HOM05D002242 ORTHO05D002275 3.7e-06 55.8 60 48.3
BolC6t37962H Brassica oleracea HOM05D011689 ORTHO05D011141 3.7e-06 55.8 86 48.8
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.7e-06 55.8 214 25.7
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.7e-06 55.8 214 25.7
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 3.7e-06 55.8 206 30.1
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 3.7e-06 55.8 166 29.5
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 6.2e-06 55.1 51 54.9
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 6.2e-06 55.1 51 54.9
Solyc05g050550.4 Solanum lycopersicum HOM05D002242 ORTHO05D002275 6.2e-06 55.1 174 28.2
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 6.2e-06 55.1 202 28.7
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 8.1e-06 54.7 226 28.3
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 8.1e-06 54.7 219 29.2
BcaB02g07348 Brassica carinata HOM05D011689 ORTHO05D011141 8.1e-06 54.7 77 53.2
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 8.1e-06 54.7 193 26.4
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 8.1e-06 54.7 78 43.6


User provided reference genes

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