Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12670 Brassica carinata HOM05D010353 ORTHO05D011141 1.2e-97 359.8 177 100.0
BcaC02g12680 Brassica carinata HOM05D010353 ORTHO05D011141 8.6e-83 310.5 177 88.7
C04p01390 Brassica napus HOM05D010353 ORTHO05D011141 8.6e-83 310.5 177 88.7
BolC4t21792H Brassica oleracea HOM05D010353 ORTHO05D011141 1.5e-82 309.7 177 88.1
A05p01240 Brassica napus HOM05D010353 ORTHO05D011141 2.5e-82 308.9 177 88.1
BraA05t19125Z Brassica rapa HOM05D010353 ORTHO05D011141 2.5e-82 308.9 177 88.1
Sp4g28580 Schrenkiella parvula HOM05D010353 ORTHO05D011141 1.7e-78 296.2 175 87.4
BcaC02g07038 Brassica carinata HOM05D010353 ORTHO05D011141 7.0e-77 290.8 177 84.7
AL4G45960 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 2.9e-75 285.4 175 82.9
Thhalv10001658m.g Eutrema salsugineum HOM05D010353 ORTHO05D011141 5.0e-75 284.6 172 84.9
AT2G46535 Arabidopsis thaliana HOM05D010353 ORTHO05D011141 1.0e-72 276.9 170 83.5
BraA04t18902Z Brassica rapa HOM05D010353 ORTHO05D011141 8.9e-72 273.9 177 79.7
Carub.0004s2925 Capsella rubella HOM05D010353 ORTHO05D011141 1.2e-71 273.5 183 79.8
CARHR141870 Cardamine hirsuta HOM05D010353 ORTHO05D011141 2.6e-71 272.3 175 80.0
C04p72210 Brassica napus HOM05D010353 ORTHO05D011141 3.4e-71 271.9 177 78.5
BolC4t28708H Brassica oleracea HOM05D010353 ORTHO05D011141 3.4e-71 271.9 177 79.1
BcaB01g03204 Brassica carinata HOM05D010353 ORTHO05D011141 9.5e-66 253.8 176 77.8
Aa31LG1G27920 Aethionema arabicum HOM05D010353 ORTHO05D011141 3.1e-64 248.8 173 76.3
A04p34440 Brassica napus HOM05D010353 ORTHO05D011141 4.4e-63 245.0 152 84.2
BcaC02g07015 Brassica carinata HOM05D010353 ORTHO05D011141 4.0e-48 195.3 139 73.4
AL5G41110 Arabidopsis lyrata HOM05D010353 ORTHO05D011141 3.3e-42 175.6 97 90.7
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 7.9e-36 154.5 179 52.0
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 3.5e-20 102.4 248 33.5
AT3G61840 Arabidopsis thaliana HOM05D011689 ORTHO05D011141 2.1e-17 93.2 123 48.8
AL5G44420 Arabidopsis lyrata HOM05D011689 ORTHO05D011141 1.4e-16 90.5 123 48.8
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.8e-16 90.1 209 34.4
C08p36670 Brassica napus HOM05D011689 ORTHO05D011141 6.9e-16 88.2 189 40.7
BolC8t51249H Brassica oleracea HOM05D011689 ORTHO05D011141 6.9e-16 88.2 189 40.7
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.0e-15 86.7 209 30.1
Carub.0005s2858 Capsella rubella HOM05D011689 ORTHO05D011141 2.6e-15 86.3 126 45.2
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 3.4e-15 85.9 212 31.6
BcaC07g42597 Brassica carinata HOM05D011689 ORTHO05D011141 5.8e-15 85.1 189 40.2
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 7.6e-15 84.7 212 34.4
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 7.6e-15 84.7 229 33.2
A09p53870 Brassica napus HOM05D011689 ORTHO05D011141 2.9e-14 82.8 186 39.8
Thhalv10006487m.g Eutrema salsugineum HOM05D011689 ORTHO05D011141 8.4e-14 81.3 122 51.6
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 8.4e-14 81.3 227 33.0
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 8.4e-14 81.3 237 30.8
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 1.4e-13 80.5 194 33.5
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.4e-13 80.5 213 32.4
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 1.9e-13 80.1 227 32.6
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 2.5e-13 79.7 231 31.2
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 3.2e-13 79.3 235 30.6
CsaV3_6G008510 Cucumis sativus L. HOM05D002242 ORTHO05D002275 4.2e-13 79.0 167 34.1
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 4.2e-13 79.0 157 36.3
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 5.5e-13 78.6 194 33.0
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 7.2e-13 78.2 188 33.5
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 1.6e-12 77.0 207 30.4
BraA09t40802Z Brassica rapa HOM05D011689 ORTHO05D011141 2.1e-12 76.6 184 38.6
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.5e-12 75.9 215 32.6
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 4.6e-12 75.5 221 29.4
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 7.9e-12 74.7 204 31.9
CARHR172170 Cardamine hirsuta HOM05D011689 ORTHO05D011141 1.0e-11 74.3 178 37.1
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 2.3e-11 73.2 245 29.4
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 3.0e-11 72.8 180 31.1
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 3.0e-11 72.8 215 31.6
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 3.0e-11 72.8 148 33.8
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 3.0e-11 72.8 204 34.8
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 3.0e-11 72.8 197 30.5
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 6.7e-11 71.6 218 30.3
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 6.7e-11 71.6 178 34.3
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 1.1e-10 70.9 196 31.6
Lalb_Chr18g0044551 Lupinus albus HOM05D002242 ORTHO05D002275 1.9e-10 70.1 168 34.5
Sp5g01530 Schrenkiella parvula HOM05D011689 ORTHO05D011141 1.9e-10 70.1 145 42.1
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 2.5e-10 69.7 207 32.9
ClCG05G000740 Citrullus lanatus HOM05D002242 ORTHO05D002275 2.5e-10 69.7 186 35.5
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 2.5e-10 69.7 213 31.5
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 2.5e-10 69.7 217 30.4
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 3.3e-10 69.3 193 31.1
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 3.3e-10 69.3 227 30.0
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 4.3e-10 68.9 203 31.0
ClCG06G002630 Citrullus lanatus HOM05D002242 ORTHO05D002275 4.3e-10 68.9 182 30.2
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.3e-10 68.9 214 31.3
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 4.3e-10 68.9 189 30.7
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.3e-10 68.9 201 28.9
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 5.7e-10 68.6 211 29.9
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 5.7e-10 68.6 107 39.3
VMungo0540G1854 Vigna mungo HOM05D002242 ORTHO05D002275 7.4e-10 68.2 173 31.2
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 9.7e-10 67.8 184 30.4
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.3e-09 67.4 210 31.0
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 1.3e-09 67.4 193 29.5
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 1.6e-09 67.0 238 30.3
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.6e-09 67.0 218 30.3
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 1.6e-09 67.0 197 33.0
BcaB02g07348 Brassica carinata HOM05D011689 ORTHO05D011141 2.2e-09 66.6 83 55.4
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 2.2e-09 66.6 201 32.8
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.2e-09 66.6 248 29.8
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 2.8e-09 66.2 218 29.8
BcaC07g42612 Brassica carinata HOM05D011689 ORTHO05D011141 3.7e-09 65.9 78 57.7
COL.COLO4_16773 Corchorus olitorius HOM05D002242 ORTHO05D002275 3.7e-09 65.9 128 39.1
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 3.7e-09 65.9 224 30.8
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.7e-09 65.9 220 30.9
Sed0004473 Sechium edule HOM05D002242 ORTHO05D002275 4.8e-09 65.5 193 33.2
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 4.8e-09 65.5 185 28.6
CAN.G481.20 Capsicum annuum HOM05D002242 ORTHO05D002275 6.3e-09 65.1 185 29.2
Phvul.006G114400 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 6.3e-09 65.1 174 30.5
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 8.2e-09 64.7 213 27.2
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 8.2e-09 64.7 210 27.6
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 8.2e-09 64.7 177 30.5
Potri.012G016700 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.1e-08 64.3 145 35.2
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.4e-08 63.9 223 29.6
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.4e-08 63.9 219 28.8
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.4e-08 63.9 219 28.8
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.4e-08 63.9 213 31.0
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 1.4e-08 63.9 194 31.4
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 1.4e-08 63.9 194 33.0
BolC6t37962H Brassica oleracea HOM05D011689 ORTHO05D011141 2.4e-08 63.2 84 52.4
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 2.4e-08 63.2 193 29.0
Gorai.008G268100 Gossypium raimondii HOM05D002242 ORTHO05D002275 3.1e-08 62.8 137 37.2
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 3.1e-08 62.8 207 30.4
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 4.1e-08 62.4 240 30.0
Gohir.A12G249200 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.1e-08 62.4 137 37.2
Gohir.D12G250000 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.1e-08 62.4 137 37.2
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 4.1e-08 62.4 207 28.0
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 5.3e-08 62.0 181 29.8
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 5.3e-08 62.0 203 30.0
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 6.9e-08 61.6 55 61.8
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 6.9e-08 61.6 197 30.5
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.2e-07 60.8 208 28.4
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 1.2e-07 60.8 203 28.1
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 1.5e-07 60.5 163 35.6
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 2.0e-07 60.1 180 30.6
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 2.0e-07 60.1 189 30.7
THA.LOC104825150 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.0e-07 60.1 190 29.5
A07p25790 Brassica napus HOM05D011689 ORTHO05D011141 2.6e-07 59.7 84 51.2
BraA07t30219Z Brassica rapa HOM05D011689 ORTHO05D011141 2.6e-07 59.7 84 51.2
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 2.6e-07 59.7 186 28.5
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 2.6e-07 59.7 186 28.5
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.6e-07 59.7 224 29.0
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.6e-07 59.7 91 39.6
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 3.4e-07 59.3 65 47.7
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.4e-07 59.3 188 29.3
EL10Ac3g05266 Beta vulgaris HOM05D002242 ORTHO05D002275 4.5e-07 58.9 86 40.7
MELO3C006014.2 Cucumis melo HOM05D002242 ORTHO05D002275 4.5e-07 58.9 197 33.0
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 4.5e-07 58.9 189 30.2
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 5.9e-07 58.5 58 56.9
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 5.9e-07 58.5 129 34.9
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 5.9e-07 58.5 194 27.8
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 5.9e-07 58.5 165 31.5
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 7.7e-07 58.2 129 34.9
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 7.7e-07 58.2 119 35.3
AL8G27650 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 1.0e-06 57.8 200 28.0
arahy.Tifrunner.gnm1.ann1.NAPQ43 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.0e-06 57.8 152 32.2
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 1.0e-06 57.8 215 24.7
vmacro06390 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 1.0e-06 57.8 193 30.1
Solyc10g009380.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 1.3e-06 57.4 191 30.9
arahy.Tifrunner.gnm1.ann1.S82JHH Arachis hypogaea HOM05D002242 ORTHO05D002275 1.7e-06 57.0 152 31.6
Carub.0008s1322 Capsella rubella HOM05D002242 ORTHO05D002275 1.7e-06 57.0 200 29.5
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.7e-06 57.0 199 31.7
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.7e-06 57.0 65 49.2
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 1.7e-06 57.0 217 30.4
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.7e-06 57.0 171 29.8
CARHR249390 Cardamine hirsuta HOM05D002242 ORTHO05D002275 2.9e-06 56.2 257 28.4
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 2.9e-06 56.2 75 42.7
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 2.9e-06 56.2 202 29.7
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 2.9e-06 56.2 208 28.8
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.9e-06 56.2 224 28.6
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.9e-06 56.2 208 28.8
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 2.9e-06 56.2 194 26.3
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 2.9e-06 56.2 223 28.7
Ah.13g070390 Amaranthus hybridus HOM05D002242 ORTHO05D002275 3.8e-06 55.8 60 46.7
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 3.8e-06 55.8 209 28.2
HanXRQChr17g0563391 Helianthus annuus HOM05D002242 ORTHO05D002275 3.8e-06 55.8 178 28.7
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 3.8e-06 55.8 166 31.3
Sopen10g005160 Solanum pennellii HOM05D002242 ORTHO05D002275 3.8e-06 55.8 172 29.7
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 5.0e-06 55.5 203 26.6
AT4G00950 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 5.0e-06 55.5 257 28.0
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 5.0e-06 55.5 59 49.2
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 5.0e-06 55.5 184 28.3
Solyc05g050550.4 Solanum lycopersicum HOM05D002242 ORTHO05D002275 5.0e-06 55.5 170 28.8
Sopen05g028980 Solanum pennellii HOM05D002242 ORTHO05D002275 5.0e-06 55.5 186 28.0
TPR.G4734 Trifolium pratense HOM05D002242 ORTHO05D002275 5.0e-06 55.5 53 54.7
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 6.5e-06 55.1 188 27.1
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 6.5e-06 55.1 190 29.5
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 8.5e-06 54.7 253 27.3
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 8.5e-06 54.7 253 27.7
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 8.5e-06 54.7 253 27.3
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 8.5e-06 54.7 50 56.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 8.5e-06 54.7 57 50.9
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 8.5e-06 54.7 210 28.6
PGR042G3115 Punica granatum HOM05D002242 ORTHO05D002275 8.5e-06 54.7 72 43.1
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 8.5e-06 54.7 189 33.3
PGSC0003DMG400018549 Solanum tuberosum HOM05D002242 ORTHO05D002275 8.5e-06 54.7 185 28.1


User provided reference genes

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