Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 6.8e-154 547.4 290 100.0
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 7.6e-129 464.2 285 88.8
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.8e-123 445.7 285 84.9
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 2.8e-123 445.7 285 84.6
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 4.5e-121 438.3 271 88.2
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 5.8e-121 438.0 279 86.0
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 2.1e-115 419.5 293 81.9
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 9.3e-111 404.1 295 74.9
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 4.2e-103 378.6 292 75.7
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 7.2e-103 377.9 292 72.6
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 2.4e-98 362.8 298 70.1
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 4.1e-90 335.5 276 70.3
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 9.1e-90 334.3 295 65.8
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 6.3e-59 231.9 298 51.3
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 1.9e-47 193.7 307 46.3
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 8.3e-43 178.3 309 46.6
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 9.2e-26 121.7 308 37.0
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.7e-24 117.5 322 34.5
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 6.6e-24 115.5 329 33.7
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 9.6e-23 111.7 326 32.8
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.2e-22 111.3 314 33.8
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.1e-22 110.5 292 34.9
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.1e-22 108.6 312 33.7
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.0e-21 106.3 304 35.9
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 8.9e-21 105.1 314 32.8
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 6.4e-19 99.0 280 35.4
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.4e-19 98.6 280 35.7
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.9e-18 97.4 279 34.8
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 5.4e-18 95.9 287 33.1
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 2.1e-17 94.0 294 34.4
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 2.7e-17 93.6 344 32.6
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.7e-17 93.6 306 33.7
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.7e-17 93.6 311 30.5
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.5e-17 93.2 281 33.8
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 3.5e-17 93.2 281 33.8
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 7.8e-17 92.0 287 33.8
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.0e-16 91.7 292 31.5
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.6e-16 89.0 278 31.7
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 1.1e-15 88.2 274 31.8
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.5e-15 87.8 277 35.0
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 3.3e-15 86.7 338 32.2
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 4.3e-15 86.3 288 31.9
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 4.3e-15 86.3 291 29.6
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 5.6e-15 85.9 278 32.7
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.3e-14 84.7 328 30.8
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.3e-14 84.7 274 33.2
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 1.6e-14 84.3 278 31.3
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.6e-14 84.3 266 30.1
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.1e-14 84.0 277 31.8
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.1e-14 84.0 277 31.8
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 2.1e-14 84.0 310 30.0
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 2.8e-14 83.6 294 31.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 4.8e-14 82.8 296 30.7
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.2e-14 82.4 280 30.7
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 8.1e-14 82.0 274 32.8
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 1.4e-13 81.3 294 31.3
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.4e-13 81.3 274 32.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 2.4e-13 80.5 313 28.4
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 3.1e-13 80.1 304 32.2
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 9.0e-13 78.6 268 32.1
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.2e-12 78.2 275 32.0
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 2.0e-12 77.4 307 31.6
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 3.4e-12 76.6 278 29.1
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 9.9e-12 75.1 289 29.1
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 2.9e-11 73.6 270 28.5
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 1.9e-10 70.9 273 30.8
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.9e-10 70.9 275 29.1
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.4e-10 70.5 304 29.9
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 3.2e-10 70.1 292 31.5
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 4.2e-10 69.7 289 29.8
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 5.4e-10 69.3 311 28.6
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 7.1e-10 68.9 318 27.7
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 7.1e-10 68.9 265 27.9
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 1.2e-09 68.2 300 28.7
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.1e-09 67.4 282 29.4
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 2.7e-09 67.0 276 30.4
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 3.5e-09 66.6 259 32.0
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 3.5e-09 66.6 299 30.1
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 1.3e-08 64.7 298 27.5
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 1.8e-08 64.3 262 31.3
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.8e-08 64.3 78 46.2
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.0e-08 63.5 262 30.9
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 3.0e-08 63.5 287 28.2
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.9e-08 63.2 272 30.1
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.9e-08 63.2 263 31.6
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 6.7e-08 62.4 309 29.1
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 8.7e-08 62.0 271 28.8
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.5e-07 61.2 278 28.1
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 3.3e-07 60.1 222 30.2
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 5.6e-07 59.3 275 27.6
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 5.6e-07 59.3 223 30.9
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.3e-06 58.2 264 26.9
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.3e-06 58.2 258 27.1
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 2.1e-06 57.4 294 24.8
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 2.8e-06 57.0 232 30.2
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.8e-06 57.0 282 25.5
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 6.2e-06 55.8 282 28.7
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 8.1e-06 55.5 191 30.4


User provided reference genes

Program Settings