Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12620 Brassica carinata HOM05D001176 ORTHO05D014361 1.6e-45 185.7 90 100.0
BolC4t21752H Brassica oleracea HOM05D001176 ORTHO05D014361 2.0e-43 178.7 86 100.0
BcaC01g01099 Brassica carinata HOM05D001176 ORTHO05D014361 2.0e-27 125.6 73 86.3
C03p88080 Brassica napus HOM05D001176 ORTHO05D014361 2.0e-27 125.6 73 86.3
BcaB04g18283 Brassica carinata HOM05D001176 ORTHO05D008595 7.1e-25 117.1 108 63.0
C05p62050 Brassica napus HOM05D001176 ORTHO05D014361 1.6e-24 115.9 103 63.1
BcaC07g37875 Brassica carinata HOM05D001176 ORTHO05D008595 2.1e-24 115.5 108 62.0
A08p11660 Brassica napus HOM05D001176 ORTHO05D008595 2.1e-24 115.5 108 62.0
BolC8t48268H Brassica oleracea HOM05D001176 ORTHO05D008595 2.1e-24 115.5 108 62.0
BraA08t33160Z Brassica rapa HOM05D001176 ORTHO05D008595 2.1e-24 115.5 108 62.0
Thhalv10024764m.g Eutrema salsugineum HOM05D001176 ORTHO05D008595 4.6e-24 114.4 109 60.6
BcaC09g48232 Brassica carinata HOM05D001176 ORTHO05D014361 3.0e-23 111.7 103 62.1
CARHR221850 Cardamine hirsuta HOM05D001176 ORTHO05D008595 3.9e-23 111.3 109 58.7
A06p19270 Brassica napus HOM05D001600 ORTHO05D001502 8.6e-23 110.2 61 90.2
Sp7g13340 Schrenkiella parvula HOM05D001176 ORTHO05D008595 2.5e-22 108.6 108 59.3
Aa31LG9G2280 Aethionema arabicum HOM05D001176 ORTHO05D008595 1.2e-21 106.3 108 57.4
Carub.0007s2688 Capsella rubella HOM05D001176 ORTHO05D008595 2.1e-21 105.5 108 56.5
Dinv44680 Davidia involucrata HOM05D001176 ORTHO05D008595 2.8e-21 105.1 113 54.9
BolC4t22238H Brassica oleracea HOM05D001176 ORTHO05D014361 6.2e-21 104.0 61 86.9
THA.LOC104808510 Tarenaya hassleriana HOM05D001176 ORTHO05D008595 8.1e-21 103.6 108 55.6
Eucgr.A00911 Eucalyptus grandis HOM05D001176 ORTHO05D008595 1.1e-20 103.2 113 54.0
Manes.09G079657 Manihot esculenta HOM05D001176 ORTHO05D008595 1.1e-20 103.2 110 55.5
PGR031G0231 Punica granatum HOM05D001176 ORTHO05D008595 3.1e-20 101.7 111 53.2
Nn7g38268 Nelumbo nucifera HOM05D001176 ORTHO05D008595 4.0e-20 101.3 113 52.2
Gohir.D07G191200 Gossypium hirsutum HOM05D001176 ORTHO05D008595 5.2e-20 100.9 109 54.1
Gorai.001G213800 Gossypium raimondii HOM05D001176 ORTHO05D008595 5.2e-20 100.9 109 54.1
Sed0015103 Sechium edule HOM05D001176 ORTHO05D008595 5.2e-20 100.9 113 52.2
Ciclev10011353m.g Citrus clementina HOM05D001176 ORTHO05D008595 6.8e-20 100.5 133 48.1
EL10Ac6g15342 Beta vulgaris HOM05D001176 ORTHO05D008595 8.9e-20 100.1 108 53.7
TAR626G0594 Trochodendron aralioides HOM05D001176 ORTHO05D008595 1.2e-19 99.8 74 68.9
Atru.chr8.1001 Acer truncatum HOM05D001176 ORTHO05D008595 1.5e-19 99.4 109 52.3
CsaV3_4G007300 Cucumis sativus L. HOM05D001176 ORTHO05D008595 2.0e-19 99.0 119 48.7
Duzib138G1658 Durio zibethinus HOM05D001176 ORTHO05D008595 2.0e-19 99.0 109 53.2
Gohir.A07G184400 Gossypium hirsutum HOM05D001176 ORTHO05D008595 2.0e-19 99.0 109 53.2
QL04p062166 Quercus lobata HOM05D001176 ORTHO05D008595 3.4e-19 98.2 109 54.1
Rhsim12G0014900 Rhododendron simsii HOM05D001176 ORTHO05D008595 3.4e-19 98.2 108 53.7
Thecc.01G173300 Theobroma cacao HOM05D001176 ORTHO05D008595 3.4e-19 98.2 109 53.2
A02p29190 Brassica napus HOM05D001176 ORTHO05D014361 4.4e-19 97.8 61 82.0
CiPaw.04G072600 Carya illinoinensis HOM05D001176 ORTHO05D008595 4.4e-19 97.8 109 53.2
MBI18_g31363_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D008595 4.4e-19 97.8 109 52.3
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.4e-19 97.8 67 71.6
CSS0022319 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D008595 5.8e-19 97.4 108 52.8
CSS0028297 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D008595 5.8e-19 97.4 108 52.8
Cpa.g.sc8.285 Carica papaya HOM05D001176 ORTHO05D008595 7.6e-19 97.1 108 52.8
TWI32G0878 Tripterygium wilfordii HOM05D001176 ORTHO05D008595 7.6e-19 97.1 134 45.5
AT4G15110 Arabidopsis thaliana HOM05D001176 ORTHO05D008595 9.9e-19 96.7 109 54.1
MD17G1129200 Malus domestica HOM05D001176 ORTHO05D008595 9.9e-19 96.7 109 51.4
Nitab4.5_0003650g0010 Nicotiana tabacum HOM05D001176 ORTHO05D008595 1.3e-18 96.3 109 51.4
Sc03g0005510 Simmondsia chinensis HOM05D001176 ORTHO05D008595 1.3e-18 96.3 108 51.9
FvH4_6g39510 Fragaria vesca HOM05D001176 ORTHO05D008595 1.7e-18 95.9 109 51.4
FAN02G3300 Fragaria x ananassa HOM05D001176 ORTHO05D008595 1.7e-18 95.9 109 51.4
FAN05G2373 Fragaria x ananassa HOM05D001176 ORTHO05D008595 1.7e-18 95.9 109 51.4
FAN14G2976 Fragaria x ananassa HOM05D001176 ORTHO05D008595 1.7e-18 95.9 109 51.4
RcHm_v2.0_Chr2g0153541 Rosa chinensis HOM05D001176 ORTHO05D008595 1.7e-18 95.9 109 51.4
Aqoxy2G00588 Aquilegia oxysepala HOM05D001176 ORTHO05D008595 2.2e-18 95.5 109 50.5
ClCG07G010970 Citrullus lanatus HOM05D001176 ORTHO05D008595 2.2e-18 95.5 111 51.4
Peaxi162Scf00322g00310 Petunia axillaris HOM05D001176 ORTHO05D008595 2.2e-18 95.5 109 50.5
HanXRQChr01g0025791 Helianthus annuus HOM05D001176 ORTHO05D008595 2.9e-18 95.1 112 50.0
Prupe.3G185900 Prunus persica HOM05D001176 ORTHO05D008595 2.9e-18 95.1 109 52.3
Ah.03g147660 Amaranthus hybridus HOM05D001176 ORTHO05D008595 3.8e-18 94.7 109 50.5
AL7G40600 Arabidopsis lyrata HOM05D001176 ORTHO05D008595 3.8e-18 94.7 109 53.2
MSTRG.6599 Avicennia marina HOM05D001176 ORTHO05D008595 3.8e-18 94.7 116 50.0
Potri.006G006200 Populus trichocarpa HOM05D001176 ORTHO05D008595 3.8e-18 94.7 110 50.0
GSVIVG01015850001 Vitis vinifera HOM05D001176 ORTHO05D008595 3.8e-18 94.7 112 50.0
vmacro08759 Vaccinium macrocarpon HOM05D001176 ORTHO05D008595 4.9e-18 94.4 60 76.7
Actinidia12511 Actinidia chinensis HOM05D001176 ORTHO05D008595 6.4e-18 94.0 112 50.0
ECA248G2999 Erigeron canadensis HOM05D001176 ORTHO05D008595 6.4e-18 94.0 110 50.9
Solyc05g016330.3 Solanum lycopersicum HOM05D001176 ORTHO05D008595 6.4e-18 94.0 109 50.5
Sopen11g017990 Solanum pennellii HOM05D001176 ORTHO05D014361 6.4e-18 94.0 109 50.5
CAN.G1272.1 Capsicum annuum HOM05D001176 ORTHO05D008595 1.9e-17 92.4 109 49.5
Haze_13645 Corylus avellana HOM05D001176 ORTHO05D008595 1.9e-17 92.4 109 50.5
LjContig00222g0002891 Lotus japonicus HOM05D001176 ORTHO05D008595 1.9e-17 92.4 109 50.5
Sopen05g013440 Solanum pennellii HOM05D001176 ORTHO05D014361 1.9e-17 92.4 109 49.5
Cfa022496 Carpinus fangiana HOM05D001176 ORTHO05D008595 3.2e-17 91.7 109 49.5
Glyma.11G016200 Glycine max HOM05D001176 ORTHO05D008595 3.2e-17 91.7 109 50.5
Phvul.002G165400 Phaseolus vulgaris HOM05D001176 ORTHO05D008595 3.2e-17 91.7 109 50.5
ATR0815G009 Amborella trichopoda HOM05D001176 ORTHO05D008595 4.2e-17 91.3 113 48.7
Lsat_1_v5_gn_1_58321 Lactuca sativa HOM05D001176 ORTHO05D008595 4.2e-17 91.3 110 50.0
Sabra06G0005000 Salix brachista HOM05D001176 ORTHO05D008595 4.2e-17 91.3 62 71.0
PGSC0003DMG400024342 Solanum tuberosum HOM05D001176 ORTHO05D008595 4.2e-17 91.3 109 49.5
CANSAT64G1576 Cannabis sativa HOM05D001176 ORTHO05D008595 5.4e-17 90.9 109 50.5
arahy.Tifrunner.gnm1.ann1.M1JRW6 Arachis hypogaea HOM05D001176 ORTHO05D008595 7.1e-17 90.5 110 49.1
arahy.Tifrunner.gnm1.ann1.NAXY0P Arachis hypogaea HOM05D001176 ORTHO05D008595 7.1e-17 90.5 110 49.1
DCAR_013342 Daucus carota HOM05D001176 ORTHO05D008595 7.1e-17 90.5 111 51.4
Oeu012378.4 Olea europaea HOM05D001176 ORTHO05D008595 7.1e-17 90.5 78 61.5
PSO675G4847 Papaver somniferum HOM05D001176 ORTHO05D008595 1.6e-16 89.4 110 50.0
Ca_24495_v3 Cicer arietinum L. HOM05D001176 ORTHO05D008595 2.1e-16 89.0 110 50.0
Cc05_g00020 Coffea canephora HOM05D001176 ORTHO05D008595 2.7e-16 88.6 109 47.7
VMungo1215G2273 Vigna mungo HOM05D001176 ORTHO05D008595 2.7e-16 88.6 109 48.6
SGA_v2.0_scaffold73G24426 Striga asiatica HOM05D001176 ORTHO05D008595 3.5e-16 88.2 113 47.8
Zm00001eb207080 Zea mays HOM05D001176 ORTHO05D008595 3.5e-16 88.2 116 45.7
Lj1A1044G23 Lonicera japonica HOM05D001176 ORTHO05D008595 6.0e-16 87.4 125 45.6
SalBow7G2432 Salvia bowleyana HOM05D001176 ORTHO05D008595 7.8e-16 87.0 112 50.0
Os02g0173100 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D014361 1.3e-15 86.3 62 69.4
Migut.M00093 Erythranthe guttata HOM05D001176 ORTHO05D008595 2.3e-15 85.5 112 48.2
Medtr5g009110 Medicago truncatula HOM05D001176 ORTHO05D008595 2.3e-15 85.5 114 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2648 Anthoceros agrestis HOM05D001176 ORTHO05D008595 3.0e-15 85.1 113 46.0
TPR.G38037 Trifolium pratense HOM05D001176 ORTHO05D008595 3.0e-15 85.1 111 48.6
Psat2g186080 Pisum sativum HOM05D001176 ORTHO05D008595 5.1e-15 84.3 110 47.3
Pp3c4_28160 Physcomitrium patens HOM05D001176 ORTHO05D008595 1.1e-14 83.2 108 46.3
Mapoly0245s0001 Marchantia polymorpha HOM05D001176 ORTHO05D008595 1.9e-14 82.4 100 48.0
Nitab4.5_0000019g0160 Nicotiana tabacum HOM05D001176 ORTHO05D008595 3.3e-14 81.6 92 51.1
HPP92_004191 Vanilla planifolia HOM05D001176 ORTHO05D008595 1.2e-13 79.7 123 39.8
Lalb_Chr05g0211481 Lupinus albus HOM05D001176 ORTHO05D008595 3.6e-13 78.2 111 42.3
unitig_899.g15286 Utricularia gibba HOM05D001176 ORTHO05D008595 8.1e-13 77.0 111 44.1
SMO119G0427 Selaginella moellendorffii HOM05D001176 ORTHO05D008595 3.4e-11 71.6 92 43.5
PSO541G0961 Papaver somniferum HOM05D001176 ORTHO05D008595 1.6e-08 62.8 87 50.6
AUR62017853 Chenopodium quinoa HOM05D001176 ORTHO05D008595 3.3e-06 55.1 26 88.5
MELO3C016233.2 Cucumis melo HOM05D001176 ORTHO05D008595 4.3e-06 54.7 74 43.2
ATR1094G011 Amborella trichopoda HOM05D001176 ORTHO05D014361 9.6e-06 53.5 46 56.5


User provided reference genes

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