Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 4.3e-139 498.0 264 100.0
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 8.8e-84 314.3 267 73.0
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 8.8e-84 314.3 267 73.0
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 5.7e-83 311.6 267 72.3
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 3.5e-80 302.4 262 71.4
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 3.5e-80 302.4 262 71.4
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 3.4e-75 285.8 259 67.6
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 3.4e-75 285.8 259 67.6
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 3.4e-75 285.8 259 67.6
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 2.2e-74 283.1 264 66.7
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 4.9e-74 282.0 265 66.8
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 8.3e-74 281.2 264 65.2
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 8.3e-74 281.2 264 66.3
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.1e-73 280.8 264 65.2
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 5.4e-73 278.5 264 64.8
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 9.2e-73 277.7 262 65.3
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 1.2e-72 277.3 262 64.9
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 3.5e-72 275.8 266 64.7
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 3.5e-72 275.8 270 63.0
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 6.2e-69 265.0 262 63.4
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 1.8e-68 263.5 232 69.8
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 1.5e-67 260.4 267 61.0
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 1.3e-63 247.3 274 55.5
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 3.0e-63 246.1 262 56.1
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 6.6e-63 245.0 262 55.7
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 6.6e-63 245.0 262 55.7
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 6.6e-63 245.0 265 57.7
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 6.6e-63 245.0 265 57.7
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 1.1e-62 244.2 262 55.7
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.1e-62 244.2 265 57.0
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 1.9e-62 243.4 279 54.5
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 1.9e-62 243.4 265 58.5
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.9e-62 243.4 262 55.3
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 1.9e-62 243.4 268 59.3
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 1.9e-62 243.4 269 57.6
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 4.3e-62 242.3 268 59.0
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 5.6e-62 241.9 277 56.7
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 5.6e-62 241.9 264 58.3
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 5.6e-62 241.9 265 57.0
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 7.3e-62 241.5 272 55.9
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 9.5e-62 241.1 267 57.3
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 9.5e-62 241.1 270 57.4
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.2e-61 240.7 262 56.5
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 1.2e-61 240.7 264 57.2
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 1.2e-61 240.7 262 55.7
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.6e-61 240.4 277 56.3
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 1.6e-61 240.4 276 54.7
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.6e-61 240.4 266 55.3
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 1.6e-61 240.4 270 56.7
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 2.1e-61 240.0 281 53.4
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 3.6e-61 239.2 271 56.8
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 4.7e-61 238.8 271 56.8
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 4.7e-61 238.8 270 54.8
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 4.7e-61 238.8 269 56.1
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 6.2e-61 238.4 273 56.4
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 6.2e-61 238.4 281 54.4
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 1.1e-60 237.7 270 55.6
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 2.3e-60 236.5 277 56.7
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 3.1e-60 236.1 278 54.3
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.1e-60 236.1 271 56.5
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.2e-60 235.3 275 53.8
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 5.2e-60 235.3 271 55.7
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 5.2e-60 235.3 273 54.9
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 1.2e-59 234.2 268 55.6
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.5e-59 233.8 276 54.3
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 2.6e-59 233.0 266 53.8
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 2.6e-59 233.0 265 57.7
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 4.4e-59 232.3 267 55.8
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 5.8e-59 231.9 275 53.5
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 7.5e-59 231.5 275 53.8
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 1.3e-58 230.7 270 53.7
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.3e-58 230.7 274 53.6
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 1.7e-58 230.3 275 53.1
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 2.2e-58 229.9 277 52.7
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 2.9e-58 229.6 269 55.0
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.9e-58 229.6 275 52.0
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 2.9e-58 229.6 265 55.5
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 4.9e-58 228.8 273 53.8
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 6.4e-58 228.4 266 54.9
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 8.3e-58 228.0 286 52.8
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.1e-57 227.6 275 52.4
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 1.1e-57 227.6 275 52.7
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 1.9e-57 226.9 277 52.3
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 1.9e-57 226.9 266 53.0
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 2.4e-57 226.5 262 55.7
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 4.1e-57 225.7 269 52.4
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 4.1e-57 225.7 260 53.8
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 5.4e-57 225.3 275 51.6
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 5.4e-57 225.3 268 52.6
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 5.4e-57 225.3 270 52.6
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 7.1e-57 224.9 270 53.3
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 7.1e-57 224.9 268 51.9
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 7.1e-57 224.9 275 51.6
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 9.2e-57 224.6 271 51.7
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 9.2e-57 224.6 264 53.8
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 1.2e-56 224.2 269 54.6
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 1.2e-56 224.2 274 51.5
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 1.2e-56 224.2 275 51.6
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 1.6e-56 223.8 261 55.6
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.6e-56 223.8 264 53.8
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.1e-56 223.4 269 53.5
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.1e-56 223.4 269 53.5
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 2.1e-56 223.4 266 53.4
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 2.7e-56 223.0 270 53.7
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 2.7e-56 223.0 265 54.3
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 4.6e-56 222.2 265 53.2
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 6.0e-56 221.9 259 54.4
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 1.0e-55 221.1 266 53.4
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 1.3e-55 220.7 264 53.0
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 1.3e-55 220.7 269 52.4
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 1.7e-55 220.3 265 54.7
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 2.3e-55 219.9 271 52.4
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 3.0e-55 219.5 275 51.6
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 6.6e-55 218.4 264 53.4
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 8.6e-55 218.0 267 52.1
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 1.1e-54 217.6 267 52.1
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.1e-54 217.6 269 51.3
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 1.5e-54 217.2 264 53.0
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 1.5e-54 217.2 268 53.0
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 3.3e-54 216.1 265 52.1
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 3.3e-54 216.1 265 54.0
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 4.3e-54 215.7 267 51.3
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 4.3e-54 215.7 267 51.3
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 4.3e-54 215.7 266 51.9
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 7.3e-54 214.9 266 52.3
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 9.5e-54 214.5 268 50.4
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.2e-53 214.2 262 51.5
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 1.2e-53 214.2 257 52.1
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 1.6e-53 213.8 257 53.7
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 6.2e-53 211.8 267 50.9
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 8.1e-53 211.5 268 51.5
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.1e-49 201.1 266 51.1
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 9.2e-49 198.0 195 57.4
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 2.1e-48 196.8 271 48.3
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 2.1e-48 196.8 286 46.2
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 3.5e-48 196.1 291 45.4
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 9.6e-46 188.0 281 46.3
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.1e-44 183.0 177 59.9
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 1.5e-43 180.6 266 45.1
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 7.6e-43 178.3 289 41.9
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 1.7e-42 177.2 272 44.1
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 4.9e-42 175.6 273 43.6
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 7.1e-41 171.8 265 44.2
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 8.7e-39 164.9 278 41.7
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 8.7e-39 164.9 296 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 1.9e-38 163.7 268 42.9
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 7.3e-38 161.8 294 41.2
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.2e-37 158.7 158 61.4
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 6.2e-37 158.7 158 61.4
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 6.9e-36 155.2 148 57.4
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 5.8e-35 152.1 151 60.3
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 1.7e-34 150.6 293 37.2
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.8e-34 149.4 169 50.3
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.8e-34 149.4 169 50.3
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 2.1e-32 143.7 161 54.0
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 2.8e-29 133.3 262 39.3
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 1.8e-28 130.6 81 77.8
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 2.9e-26 123.2 207 43.0
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 3.3e-22 109.8 148 45.3
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 2.8e-21 106.7 108 58.3
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 6.9e-20 102.1 120 49.2
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 2.5e-17 93.6 82 64.6
vmacro13746 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 6.0e-16 89.0 255 32.2
Migut.O00503 Erythranthe guttata HOM05D003212 ORTHO05D003959 3.9e-15 86.3 106 48.1
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 5.1e-15 85.9 64 68.8
SalBow5G1921 Salvia bowleyana HOM05D003212 ORTHO05D003959 5.1e-15 85.9 96 52.1
vmacro22863 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 3.3e-14 83.2 172 36.0
SalBow5G3827 Salvia bowleyana HOM05D003212 ORTHO05D003959 7.4e-14 82.0 97 49.5
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.7e-13 79.7 263 31.9
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 4.8e-13 79.3 263 31.9
CAN.G919.25 Capsicum annuum HOM05D003212 ORTHO05D003959 1.1e-12 78.2 73 61.6
Cpa.g.sc223.9 Carica papaya HOM05D003212 ORTHO05D003959 4.5e-11 72.8 103 50.5
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 1.7e-10 70.9 46 76.1
SMO250G0012 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 2.2e-10 70.5 66 53.0
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 3.8e-10 69.7 48 66.7
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 3.8e-10 69.7 46 76.1
HPP92_003227 Vanilla planifolia HOM05D003212 ORTHO05D003959 5.0e-10 69.3 69 58.0
SMO259G0030 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 8.5e-10 68.6 66 51.5
Glyma.15G237000 Glycine max HOM05D003212 ORTHO05D003959 2.7e-08 63.5 92 50.0
BcaC08g43728 Brassica carinata HOM05D003212 ORTHO05D003959 1.1e-06 58.2 53 58.5
Glyma.20G015500 Glycine max HOM05D003212 ORTHO05D003959 3.3e-06 56.6 35 71.4


User provided reference genes

Program Settings