Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12596 Brassica carinata HOM05D013471 ORTHO05D015349 8.2e-299 1029.6 524 100.0
BolC4t21715H Brassica oleracea HOM05D013471 ORTHO05D015349 1.0e-288 996.1 543 95.0
BcaC02g12610 Brassica carinata HOM05D013471 ORTHO05D015349 2.1e-270 935.3 543 90.8
BolC4t21738H Brassica oleracea HOM05D013471 ORTHO05D015349 2.6e-204 715.7 395 93.7
C04p01000 Brassica napus HOM05D013471 ORTHO05D015349 1.0e-195 687.2 545 70.1
BcaB02g09550 Brassica carinata HOM05D013471 ORTHO05D015349 1.0e-187 660.6 406 87.4
BraA05t19086Z Brassica rapa HOM05D013471 ORTHO05D015349 1.9e-186 656.4 552 67.2
A05p00830 Brassica napus HOM05D013471 ORTHO05D015349 3.2e-178 629.0 554 65.0
BcaC02g12825 Brassica carinata HOM05D013471 ORTHO05D015349 4.1e-173 612.1 544 64.9
BcaC02g12621 Brassica carinata HOM05D013471 ORTHO05D015349 9.1e-165 584.3 559 61.4
BolC4t21753H Brassica oleracea HOM05D013471 ORTHO05D015349 7.3e-130 468.4 324 76.5
AL4G45290 Arabidopsis lyrata HOM05D013471 ORTHO05D015349 2.1e-84 317.4 451 46.8
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.1e-37 162.2 442 31.2
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.5e-37 161.8 428 29.4
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 8.8e-35 152.5 414 32.1
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 4.4e-34 150.2 371 33.7
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 2.2e-33 147.9 414 30.4
AL5G44790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 7.0e-32 142.9 424 28.1
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.0e-31 141.4 423 28.8
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 2.7e-31 141.0 408 27.9
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 2.7e-31 141.0 353 31.2
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.5e-31 140.2 384 29.4
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.3e-30 138.7 416 27.9
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 8.6e-30 136.0 377 30.8
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.1e-29 135.6 379 29.8
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.9e-29 134.8 379 29.8
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 1.9e-29 134.8 370 31.6
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.3e-29 134.0 364 29.1
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 5.5e-29 133.3 371 29.6
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 7.2e-29 132.9 379 29.3
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 1.6e-28 131.7 377 31.0
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.1e-28 131.3 333 29.4
AT5G28340 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 2.1e-28 131.3 309 32.4
AT5G28380 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 2.1e-28 131.3 309 32.4
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 1.0e-27 129.0 377 29.7
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 1.8e-27 128.3 418 26.6
BcaC08g45154 Brassica carinata HOM05D002825 ORTHO05D003824 2.3e-27 127.9 383 30.0
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 4.0e-27 127.1 323 29.4
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 1.2e-26 125.6 366 28.4
C09p31390 Brassica napus HOM05D002825 ORTHO05D003824 1.2e-26 125.6 362 28.7
BolC6t37944H Brassica oleracea HOM05D002825 ORTHO05D003824 1.2e-26 125.6 383 29.8
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 1.5e-26 125.2 383 30.0
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 2.0e-26 124.8 380 28.4
C06p27760 Brassica napus HOM05D002825 ORTHO05D003824 2.0e-26 124.8 383 29.8
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 2.0e-26 124.8 407 28.3
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 2.6e-26 124.4 366 27.6
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 3.4e-26 124.0 366 27.6
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 4.4e-26 123.6 323 28.5
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 9.8e-26 122.5 376 29.8
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 1.3e-25 122.1 329 29.8
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 2.2e-25 121.3 371 30.5
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 2.2e-25 121.3 379 28.8
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 3.7e-25 120.6 383 30.0
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 4.9e-25 120.2 371 30.5
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 6.3e-25 119.8 377 28.6
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 1.6e-23 115.2 363 28.1
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.7e-23 114.4 389 25.7
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 4.5e-23 113.6 353 29.7
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 5.9e-23 113.2 327 26.3
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 1.3e-22 112.1 366 29.2
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.3e-22 111.3 378 28.3
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 6.6e-22 109.8 376 26.1
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 6.6e-22 109.8 371 27.0
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 8.6e-22 109.4 372 27.2
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 1.1e-21 109.0 396 27.8
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 1.5e-21 108.6 386 25.9
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 1.9e-21 108.2 366 27.3
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 1.9e-21 108.2 366 27.3
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 2.5e-21 107.8 346 29.5
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 5.6e-21 106.7 366 27.3
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.2e-20 105.5 377 27.6
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.6e-20 105.1 395 27.3
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 3.6e-20 104.0 366 27.6
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 1.0e-19 102.4 369 26.8
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 1.0e-19 102.4 325 27.1
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 1.8e-19 101.7 377 26.8
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 2.3e-19 101.3 353 26.9
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 4.0e-19 100.5 394 27.7
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 3.4e-18 97.4 328 29.9
BcaC01g05127 Brassica carinata HOM05D002825 ORTHO05D003824 4.4e-18 97.1 374 27.8
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.7e-17 95.1 215 33.5
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-17 95.1 370 27.3
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 1.7e-17 95.1 393 27.2
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 2.2e-17 94.7 406 27.1
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 2.2e-17 94.7 393 25.4
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 8.3e-17 92.8 393 25.2
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.1e-16 92.4 351 28.2
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.1e-16 92.4 393 26.0
AL5G42780 Arabidopsis lyrata HOM05D002825 ORTHO05D023647 3.2e-16 90.9 217 33.6
HanXRQChr08g0228491 Helianthus annuus HOM05D002825 ORTHO05D003824 5.4e-16 90.1 310 26.5
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 9.2e-16 89.4 376 24.5
CARHR265210 Cardamine hirsuta HOM05D002825 ORTHO05D011549 7.8e-15 86.3 413 25.9
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 1.0e-14 85.9 396 24.2
BolC9t55997H Brassica oleracea HOM05D002825 ORTHO05D003824 1.7e-14 85.1 175 33.1
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 2.3e-14 84.7 389 25.2
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 3.9e-14 84.0 402 25.1
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 5.0e-14 83.6 359 25.3
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 2.5e-13 81.3 370 26.2
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 5.6e-13 80.1 392 26.3
AUR62025156 Chenopodium quinoa HOM05D006156 ORTHO05D007699 5.6e-13 80.1 248 29.8
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 7.3e-13 79.7 415 24.3
Sc25g0004880 Simmondsia chinensis HOM05D006156 ORTHO05D007699 7.3e-13 79.7 248 30.6
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 9.5e-13 79.3 421 24.7
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 1.2e-12 79.0 371 27.2
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.6e-12 78.6 251 27.1
CARHR170900 Cardamine hirsuta HOM05D002825 ORTHO05D023647 1.6e-12 78.6 258 27.9
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 2.1e-12 78.2 147 36.7
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 2.8e-12 77.8 373 25.7
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 2.8e-12 77.8 373 25.7
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 2.8e-12 77.8 355 24.2
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 2.8e-12 77.8 99 43.4
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.6e-12 77.4 350 24.9
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 3.6e-12 77.4 381 26.0
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 4.7e-12 77.0 371 26.7
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 4.7e-12 77.0 371 26.7
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 4.7e-12 77.0 371 26.7
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 4.7e-12 77.0 99 43.4
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 6.2e-12 76.6 257 26.5
AL5G29530 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 8.0e-12 76.3 250 29.2
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 1.1e-11 75.9 393 24.7
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 3.1e-11 74.3 393 25.2
Carub.0201s0001 Capsella rubella HOM05D002825 ORTHO05D003824 4.0e-11 73.9 388 24.7
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 4.0e-11 73.9 336 25.0
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 4.0e-11 73.9 393 25.2
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 4.0e-11 73.9 393 25.2
BcaC04g21472 Brassica carinata HOM05D002825 ORTHO05D003824 1.2e-10 72.4 118 36.4
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 1.2e-10 72.4 135 36.3
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 2.0e-10 71.6 120 37.5
CARHR170480 Cardamine hirsuta HOM05D002825 ORTHO05D023647 2.6e-10 71.2 162 29.6
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.4e-10 70.9 426 23.7
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 4.4e-10 70.5 371 25.9
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 4.4e-10 70.5 147 32.7
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 4.4e-10 70.5 124 34.7
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 5.8e-10 70.1 190 29.5
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 5.8e-10 70.1 190 29.5
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 9.8e-10 69.3 147 32.7
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 1.3e-09 68.9 371 25.9
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 1.3e-09 68.9 392 24.5
Zm00001eb161270 Zea mays HOM05D006156 ORTHO05D007699 1.7e-09 68.6 237 29.1
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 2.2e-09 68.2 179 30.7
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 2.2e-09 68.2 392 24.5
C01p48210 Brassica napus HOM05D002825 ORTHO05D003824 3.7e-09 67.4 198 26.3
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.9e-09 67.0 147 32.0
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 4.9e-09 67.0 373 24.9
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 4.9e-09 67.0 373 24.9
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 6.4e-09 66.6 358 26.3
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 6.4e-09 66.6 371 25.3
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 1.1e-08 65.9 371 24.0
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 1.1e-08 65.9 87 43.7
Aqoxy6G01599 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.9e-08 65.1 298 24.5
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 1.9e-08 65.1 392 24.5
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 1.9e-08 65.1 392 24.5
TAR629G3483 Trochodendron aralioides HOM05D006156 ORTHO05D007699 1.9e-08 65.1 262 26.7
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 2.4e-08 64.7 362 24.6
C08p36570 Brassica napus HOM05D002825 ORTHO05D003824 3.2e-08 64.3 197 26.4
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 3.2e-08 64.3 371 25.3
BolC8t51240H Brassica oleracea HOM05D002825 ORTHO05D003824 3.2e-08 64.3 197 26.4
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 3.2e-08 64.3 87 43.7
Carub.0006s2575 Capsella rubella HOM05D002825 ORTHO05D011549 3.2e-08 64.3 401 23.9
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 3.2e-08 64.3 387 23.3
TAR374G1306 Trochodendron aralioides HOM05D006156 ORTHO05D007699 7.0e-08 63.2 262 27.1
BcaB02g07363 Brassica carinata HOM05D002825 ORTHO05D021407 9.2e-08 62.8 154 37.0
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.2e-07 62.4 187 27.8
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 1.2e-07 62.4 99 37.4
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 1.6e-07 62.0 369 24.4
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 2.7e-07 61.2 99 39.4
ATR1089G152 Amborella trichopoda HOM05D002825 ORTHO05D003824 3.5e-07 60.8 366 24.3
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 3.5e-07 60.8 156 30.8
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 4.6e-07 60.5 401 21.9
C06p27800 Brassica napus HOM05D000647 ORTHO05D011549 7.8e-07 59.7 235 27.2
BolC6t37947H Brassica oleracea HOM05D000647 ORTHO05D011549 7.8e-07 59.7 235 27.2
TAR633G0899 Trochodendron aralioides HOM05D006156 ORTHO05D007699 7.8e-07 59.7 265 26.4
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 1.0e-06 59.3 90 42.2
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 1.0e-06 59.3 90 42.2
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 1.0e-06 59.3 87 42.5
SGA_v2.0_scaffold192G40548 Striga asiatica HOM05D006156 ORTHO05D007699 1.3e-06 58.9 252 25.8
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 1.7e-06 58.5 91 39.6
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 3.9e-06 57.4 147 33.3
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 5.1e-06 57.0 112 34.8
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 5.1e-06 57.0 91 40.7
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 5.1e-06 57.0 159 28.3
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 6.6e-06 56.6 90 41.1
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 8.6e-06 56.2 87 42.5
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 8.6e-06 56.2 87 43.7
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 8.6e-06 56.2 87 43.7
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 8.6e-06 56.2 100 39.0
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 8.6e-06 56.2 90 38.9


User provided reference genes

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