Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12558 Brassica carinata HOM05D007078 ORTHO05D008745 2.0e-109 399.1 196 100.0
BolSC55t61232H Brassica oleracea HOM05D007078 ORTHO05D008745 2.0e-109 399.1 196 100.0
BNapus_Darmor_BZH_scaffold_188p00040 Brassica napus HOM05D007078 ORTHO05D008745 6.7e-105 384.0 224 87.5
A05p00060 Brassica napus HOM05D007078 ORTHO05D008745 7.0e-94 347.4 208 88.0
BraA05t19002Z Brassica rapa HOM05D007078 ORTHO05D008745 7.0e-94 347.4 208 88.0
BcaB02g08732 Brassica carinata HOM05D007078 ORTHO05D008745 1.3e-87 326.6 218 79.4
Sp4g29960 Schrenkiella parvula HOM05D007078 ORTHO05D008745 1.7e-84 316.2 219 77.6
Thhalv10001627m.g Eutrema salsugineum HOM05D007078 ORTHO05D008745 5.6e-83 311.2 219 77.2
AL4G47660 Arabidopsis lyrata HOM05D007078 ORTHO05D008745 6.4e-79 297.7 185 82.2
AT2G48070 Arabidopsis thaliana HOM05D007078 ORTHO05D008745 2.4e-78 295.8 183 82.0
CARHR143460 Cardamine hirsuta HOM05D007078 ORTHO05D008745 6.0e-77 291.2 177 81.9
Carub.0004s3077 Capsella rubella HOM05D007078 ORTHO05D008745 8.6e-76 287.3 194 76.3
THA.LOC104823061 Tarenaya hassleriana HOM05D007078 ORTHO05D008745 5.6e-75 284.6 229 68.6
Eucgr.K03409 Eucalyptus grandis HOM05D007078 ORTHO05D008745 1.0e-68 263.8 194 70.1
EL10Ac7g17029 Beta vulgaris HOM05D007078 ORTHO05D008745 2.3e-68 262.7 161 77.0
Cfa006079 Carpinus fangiana HOM05D007078 ORTHO05D008745 2.3e-68 262.7 202 65.3
CsaV3_7G028490 Cucumis sativus L. HOM05D007078 ORTHO05D008745 3.9e-68 261.9 207 67.6
QL12p022959 Quercus lobata HOM05D007078 ORTHO05D008745 5.0e-68 261.5 185 69.7
Cpa.g.sc9.128 Carica papaya HOM05D007078 ORTHO05D008745 1.1e-67 260.4 189 69.3
Nn3g21178 Nelumbo nucifera HOM05D007078 ORTHO05D008745 1.5e-67 260.0 190 68.4
Potri.014G137300 Populus trichocarpa HOM05D007078 ORTHO05D008745 1.5e-67 260.0 164 75.0
Ciclev10022169m.g Citrus clementina HOM05D007078 ORTHO05D008745 1.9e-67 259.6 189 70.9
CiPaw.07G095800 Carya illinoinensis HOM05D007078 ORTHO05D008745 2.5e-67 259.2 189 67.7
Sed0016724 Sechium edule HOM05D007078 ORTHO05D008745 2.5e-67 259.2 156 81.4
CANSAT25G2561 Cannabis sativa HOM05D007078 ORTHO05D008745 4.3e-67 258.5 180 73.3
Dinv11266 Davidia involucrata HOM05D007078 ORTHO05D008745 4.3e-67 258.5 155 78.7
Prupe.8G247900 Prunus persica HOM05D007078 ORTHO05D008745 4.3e-67 258.5 168 74.4
TWI59G1055 Tripterygium wilfordii HOM05D007078 ORTHO05D008745 9.5e-67 257.3 187 69.0
TAR362G1057 Trochodendron aralioides HOM05D007078 ORTHO05D008745 9.5e-67 257.3 207 65.7
Duzib138G1888 Durio zibethinus HOM05D007078 ORTHO05D008745 1.2e-66 256.9 154 77.9
Lsat_1_v5_gn_9_1840 Lactuca sativa HOM05D007078 ORTHO05D008745 1.2e-66 256.9 207 65.2
MELO3C015872.2 Cucumis melo HOM05D007078 ORTHO05D008745 1.6e-66 256.5 163 77.9
Gorai.004G084200 Gossypium raimondii HOM05D007078 ORTHO05D008745 1.6e-66 256.5 211 63.5
Manes.05G071800 Manihot esculenta HOM05D007078 ORTHO05D008745 2.1e-66 256.1 157 78.3
PGR044G0767 Punica granatum HOM05D007078 ORTHO05D008745 8.1e-66 254.2 145 82.8
Gohir.D08G078400 Gossypium hirsutum HOM05D007078 ORTHO05D008745 1.1e-65 253.8 160 75.6
MD03G1271700 Malus domestica HOM05D007078 ORTHO05D008745 1.1e-65 253.8 176 72.7
ATR0626G125 Amborella trichopoda HOM05D007078 ORTHO05D008745 1.4e-65 253.4 161 75.2
Haze_04771 Corylus avellana HOM05D007078 ORTHO05D008745 2.3e-65 252.7 176 70.5
Aqoxy5G00564 Aquilegia oxysepala HOM05D007078 ORTHO05D008745 5.2e-65 251.5 169 72.8
Atru.chr5.1330 Acer truncatum HOM05D007078 ORTHO05D008745 6.8e-65 251.1 158 77.8
DCAR_018382 Daucus carota HOM05D007078 ORTHO05D008745 6.8e-65 251.1 144 81.9
ECA247G1342 Erigeron canadensis HOM05D007078 ORTHO05D008745 6.8e-65 251.1 148 81.1
RcHm_v2.0_Chr6g0291981 Rosa chinensis HOM05D007078 ORTHO05D008745 6.8e-65 251.1 190 68.4
Aa31LG1G29480 Aethionema arabicum HOM05D007078 ORTHO05D008745 8.9e-65 250.8 133 88.7
arahy.Tifrunner.gnm1.ann1.9GKU3H Arachis hypogaea HOM05D007078 ORTHO05D008745 1.2e-64 250.4 162 74.7
arahy.Tifrunner.gnm1.ann1.ERKA9X Arachis hypogaea HOM05D007078 ORTHO05D008745 1.2e-64 250.4 162 74.7
Lj1g0026447 Lotus japonicus HOM05D007078 ORTHO05D008745 1.2e-64 250.4 204 64.7
Hma1.2p1_0628F.1_g191760 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 1.5e-64 250.0 189 65.6
Psat3g066400 Pisum sativum HOM05D007078 ORTHO05D008745 1.5e-64 250.0 174 69.5
Ca_08555_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 2.0e-64 249.6 174 70.7
Os05g0404400 Oryza sativa ssp. japonica HOM05D007078 ORTHO05D008745 3.4e-64 248.8 153 77.1
GSVIVG01011060001 Vitis vinifera HOM05D007078 ORTHO05D008745 3.4e-64 248.8 166 72.3
CSS0036917 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 4.4e-64 248.4 154 75.3
CDE12G0236 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 4.4e-64 248.4 161 73.9
FvH4_2g24170 Fragaria vesca HOM05D007078 ORTHO05D008745 5.8e-64 248.1 143 83.2
Medtr7g094220 Medicago truncatula HOM05D007078 ORTHO05D008745 5.8e-64 248.1 174 71.8
CSS0044942 Camellia sinensis var. sinensis HOM05D007078 ORTHO05D008745 7.5e-64 247.7 154 75.3
FAN27G0292 Fragaria x ananassa HOM05D007078 ORTHO05D008745 7.5e-64 247.7 143 83.2
PSO210G6132 Papaver somniferum HOM05D007078 ORTHO05D008745 9.9e-64 247.3 181 67.4
HanXRQChr15g0466581 Helianthus annuus HOM05D007078 ORTHO05D008745 1.7e-63 246.5 167 73.1
PSO832G3632 Papaver somniferum HOM05D007078 ORTHO05D008745 1.7e-63 246.5 181 66.9
Glyma.19G152600 Glycine max HOM05D007078 ORTHO05D008745 2.2e-63 246.1 168 72.0
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 3.7e-63 245.4 137 83.9
Cc09_g03260 Coffea canephora HOM05D007078 ORTHO05D008745 6.4e-63 244.6 160 73.8
PGR142G0265 Punica granatum HOM05D007078 ORTHO05D008745 6.4e-63 244.6 145 79.3
Solyc05g055850.3 Solanum lycopersicum HOM05D007078 ORTHO05D008745 6.4e-63 244.6 204 63.2
Nitab4.5_0005757g0030 Nicotiana tabacum HOM05D007078 ORTHO05D008745 8.3e-63 244.2 195 63.1
VMungo1383G1152 Vigna mungo HOM05D007078 ORTHO05D008745 1.1e-62 243.8 158 72.8
Sopen05g034250 Solanum pennellii HOM05D007078 ORTHO05D008745 1.9e-62 243.0 201 63.7
TPR.G32805 Trifolium pratense HOM05D007078 ORTHO05D008745 2.4e-62 242.7 189 65.6
Migut.D00250 Erythranthe guttata HOM05D007078 ORTHO05D008745 3.2e-62 242.3 149 75.8
MD11G1292300 Malus domestica HOM05D007078 ORTHO05D008745 4.1e-62 241.9 175 70.9
Oeu047893.1 Olea europaea HOM05D007078 ORTHO05D008745 5.4e-62 241.5 136 83.8
Sc24g0004060 Simmondsia chinensis HOM05D007078 ORTHO05D008745 5.4e-62 241.5 202 61.9
Phvul.001G147500 Phaseolus vulgaris HOM05D007078 ORTHO05D008745 7.1e-62 241.1 158 72.2
PGSC0003DMG400023469 Solanum tuberosum HOM05D007078 ORTHO05D008745 9.2e-62 240.7 172 68.6
FAN15G0223 Fragaria x ananassa HOM05D007078 ORTHO05D008745 2.1e-61 239.6 138 82.6
Nitab4.5_0001436g0040 Nicotiana tabacum HOM05D007078 ORTHO05D008745 2.1e-61 239.6 195 60.5
Lalb_Chr01g0020251 Lupinus albus HOM05D007078 ORTHO05D008745 4.6e-61 238.4 170 67.6
Mapoly0037s0112 Marchantia polymorpha HOM05D007078 ORTHO05D008745 4.6e-61 238.4 162 71.0
unitig_0.g636 Utricularia gibba HOM05D007078 ORTHO05D008745 4.6e-61 238.4 157 75.2
vmacro02537 Vaccinium macrocarpon HOM05D007078 ORTHO05D008745 7.8e-61 237.7 156 71.8
Thecc.01G285900 Theobroma cacao HOM05D007078 ORTHO05D008745 1.0e-60 237.3 216 59.3
Ah.08g209880 Amaranthus hybridus HOM05D007078 ORTHO05D008745 1.7e-60 236.5 151 75.5
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.9e-60 235.3 146 75.3
AUR62026362 Chenopodium quinoa HOM05D007078 ORTHO05D008745 5.1e-60 235.0 129 86.0
AagrBONN_evm.TU.Sc2ySwM_117.1018 Anthoceros agrestis HOM05D007078 ORTHO05D008745 6.6e-60 234.6 163 69.3
Glyma.03G149600 Glycine max HOM05D007078 ORTHO05D008745 1.2e-58 230.3 135 78.5
Sabra14G0103700 Salix brachista HOM05D007078 ORTHO05D008745 2.1e-58 229.6 152 73.0
Pp3c24_17730 Physcomitrium patens HOM05D007078 ORTHO05D008745 2.8e-58 229.2 186 62.4
Lj1C43T3 Lonicera japonica HOM05D007078 ORTHO05D008745 8.9e-57 224.2 196 58.7
SMO358G0655 Selaginella moellendorffii HOM05D007078 ORTHO05D008745 8.9e-57 224.2 181 61.3
FAN24G3201 Fragaria x ananassa HOM05D007078 ORTHO05D008745 7.6e-56 221.1 131 80.9
CBR_g32237 Chara braunii HOM05D007078 ORTHO05D008745 3.6e-50 202.2 139 66.9
CDE01G0430 Ceratophyllum demersum HOM05D007078 ORTHO05D008745 1.6e-42 176.8 98 79.6
Cre03.g145207 Chlamydomonas reinhardtii HOM05D007078 ORTHO05D008745 4.0e-41 172.2 160 51.9
MCO10G051 Micromonas commoda HOM05D007078 ORTHO05D008745 5.8e-40 168.3 129 61.2
Oeu006229.1 Olea europaea HOM05D007078 ORTHO05D008745 7.6e-40 167.9 90 83.3
ClCG09G006760 Citrullus lanatus HOM05D007078 ORTHO05D008745 5.4e-38 161.8 174 55.2
MBI19_g21637_MAGBIO Magnolia biondii HOM05D007078 ORTHO05D008745 5.1e-36 155.2 184 51.1
SGA_v2.0_scaffold11G05787 Striga asiatica HOM05D007078 ORTHO05D008745 1.8e-33 146.7 136 55.1
PRCOL_00000964 Prasinoderma coloniale HOM05D007078 ORTHO05D008745 3.4e-32 142.5 122 60.7
Gohir.A08G070800 Gossypium hirsutum HOM05D007078 ORTHO05D008745 5.8e-32 141.7 146 54.8
Actinidia00723 Actinidia chinensis HOM05D007078 ORTHO05D008745 3.8e-31 139.0 75 81.3
SEGI_07843 Sequoiadendron giganteum HOM05D007078 ORTHO05D008745 1.4e-30 137.1 105 63.8
Ca_08589_v3 Cicer arietinum L. HOM05D007078 ORTHO05D008745 3.2e-30 136.0 132 56.8
Zm00001eb287740 Zea mays HOM05D007078 ORTHO05D008745 4.2e-30 135.6 97 66.0
HPP92_019174 Vanilla planifolia HOM05D007078 ORTHO05D008745 2.1e-29 133.3 93 69.9
Peaxi162Scf00156g00061 Petunia axillaris HOM05D007078 ORTHO05D008745 5.1e-28 128.6 80 78.8
PGR142G2005 Punica granatum HOM05D007078 ORTHO05D008745 7.4e-27 124.8 109 61.5
Actinidia24309 Actinidia chinensis HOM05D007078 ORTHO05D008745 1.4e-22 110.5 68 72.1
Hma1.2p1_0628F.1_g191770 Hydrangea macrophylla HOM05D007078 ORTHO05D008745 1.5e-19 100.5 56 80.4


User provided reference genes

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