Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12527 Brassica carinata HOM05D011097 ORTHO05D012775 2.2e-202 708.8 353 100.0
C04p01470 Brassica napus HOM05D011097 ORTHO05D012775 5.6e-102 375.2 184 99.5
BolC4t21802H Brassica oleracea HOM05D011097 ORTHO05D012775 4.4e-78 295.8 339 56.0
A05p01330 Brassica napus HOM05D011097 ORTHO05D012775 8.5e-66 255.0 291 57.4
BraA05t19131Z Brassica rapa HOM05D011097 ORTHO05D012775 2.0e-62 243.8 292 56.2
C04p01510 Brassica napus HOM05D011097 ORTHO05D012775 6.3e-61 238.8 283 55.8
BolC4t21801H Brassica oleracea HOM05D011097 ORTHO05D012775 1.8e-60 237.3 118 98.3
AL4G45770 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 5.5e-57 225.7 331 45.6
BcaC02g12529 Brassica carinata HOM05D011097 ORTHO05D012775 5.7e-54 215.7 222 62.2
Thhalv10001729m.g Eutrema salsugineum HOM05D011097 ORTHO05D012775 9.8e-54 214.9 211 58.3
Sp4g28460 Schrenkiella parvula HOM05D011097 ORTHO05D012775 1.6e-51 207.6 334 44.9
BcaB03g13955 Brassica carinata HOM05D011097 ORTHO05D012775 3.2e-49 199.9 155 72.3
BcaB08g36603 Brassica carinata HOM05D011097 ORTHO05D012775 4.1e-36 156.4 91 84.6
C04p01480 Brassica napus HOM05D011097 ORTHO05D012775 4.6e-35 152.9 148 60.1
AT2G46455 Arabidopsis thaliana HOM05D011097 ORTHO05D012775 5.6e-33 146.0 184 49.5
BcaC02g12528 Brassica carinata HOM05D011097 ORTHO05D012775 3.2e-28 130.2 118 66.1
THA.LOC104817347 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 4.9e-21 106.3 308 32.8
THA.LOC104817352 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.2e-19 101.7 316 32.6
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.1e-17 95.1 228 32.0
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 1.9e-17 94.4 270 29.3
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 5.6e-17 92.8 259 30.9
THA.LOC104817353 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 5.6e-17 92.8 322 31.1
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 2.1e-16 90.9 258 30.6
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 2.8e-16 90.5 247 29.1
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.1e-15 88.6 236 34.3
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 1.4e-15 88.2 259 31.3
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 2.4e-15 87.4 259 29.7
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 4.0e-15 86.7 259 34.4
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 2.6e-14 84.0 265 31.3
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 2.6e-14 84.0 254 29.9
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 4.4e-14 83.2 282 27.7
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 4.4e-14 83.2 233 31.8
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 5.8e-14 82.8 276 27.5
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 7.6e-14 82.4 264 33.0
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 1.7e-13 81.3 296 25.7
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 2.2e-13 80.9 226 33.6
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 2.2e-13 80.9 268 27.6
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 3.8e-13 80.1 225 33.3
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 4.9e-13 79.7 231 32.9
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 4.9e-13 79.7 225 33.3
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 4.9e-13 79.7 225 33.3
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 4.9e-13 79.7 258 27.9
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 4.9e-13 79.7 142 38.7
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 6.4e-13 79.3 294 28.9
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 1.1e-12 78.6 225 32.9
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 1.1e-12 78.6 293 27.3
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 1.4e-12 78.2 216 31.0
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.9e-12 77.8 209 30.6
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 2.4e-12 77.4 227 31.3
AL2G13980 Arabidopsis lyrata HOM05D011097 ORTHO05D012775 4.1e-12 76.6 121 47.1
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 4.1e-12 76.6 257 27.6
HanXRQChr17g0535271 Helianthus annuus HOM05D002290 ORTHO05D002532 4.1e-12 76.6 218 32.1
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 4.1e-12 76.6 214 28.5
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 9.2e-12 75.5 240 30.4
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 1.2e-11 75.1 256 27.7
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.6e-11 74.7 234 31.2
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 2.1e-11 74.3 293 27.6
SalBow1G4018 Salvia bowleyana HOM05D002290 ORTHO05D002532 2.7e-11 73.9 209 32.5
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 6.0e-11 72.8 267 26.2
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 6.0e-11 72.8 262 28.6
Manes.12G013800 Manihot esculenta HOM05D002290 ORTHO05D002532 6.0e-11 72.8 249 29.3
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 7.8e-11 72.4 214 28.5
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 1.0e-10 72.0 271 26.9
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 1.0e-10 72.0 224 28.6
Gohir.A02G101200 Gossypium hirsutum HOM05D002290 ORTHO05D002532 2.3e-10 70.9 240 29.6
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 2.3e-10 70.9 207 28.0
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 3.9e-10 70.1 224 28.6
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 3.9e-10 70.1 211 27.0
Psat7g112000 Pisum sativum HOM05D002290 ORTHO05D002532 3.9e-10 70.1 209 29.2
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 6.6e-10 69.3 255 28.6
MSTRG.13884 Avicennia marina HOM05D002290 ORTHO05D002532 6.6e-10 69.3 337 24.9
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 6.6e-10 69.3 187 31.0
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 6.6e-10 69.3 225 25.8
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 6.6e-10 69.3 216 29.6
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 8.7e-10 68.9 291 24.7
Gorai.003G080300 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.1e-09 68.6 237 28.7
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 1.5e-09 68.2 297 28.6
Migut.E01251 Erythranthe guttata HOM05D002290 ORTHO05D002532 1.5e-09 68.2 292 26.4
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 1.5e-09 68.2 225 25.3
AL5G28850 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 2.5e-09 67.4 309 25.9
Thhalv10004275m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 2.5e-09 67.4 299 25.1
Oeu009958.1 Olea europaea HOM05D002290 ORTHO05D002532 2.5e-09 67.4 247 28.7
Oeu034335.1 Olea europaea HOM05D002290 ORTHO05D002532 3.3e-09 67.0 262 29.4
ECA248G0759 Erigeron canadensis HOM05D002290 ORTHO05D002532 4.3e-09 66.6 158 33.5
Cc08_g16040 Coffea canephora HOM05D002290 ORTHO05D002532 5.6e-09 66.2 213 28.2
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 5.6e-09 66.2 229 28.8
THA.LOC104821823 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 5.6e-09 66.2 265 27.5
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 7.3e-09 65.9 347 25.1
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 7.3e-09 65.9 229 28.4
SGA_v2.0_scaffold305G47968 Striga asiatica HOM05D000324 ORTHO05D001014 7.3e-09 65.9 219 29.2
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 7.3e-09 65.9 284 23.9
VMungo0251G0742 Vigna mungo HOM05D002290 ORTHO05D002532 7.3e-09 65.9 265 24.9
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 1.2e-08 65.1 222 29.3
AT5G62050 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 2.1e-08 64.3 306 24.8
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 2.1e-08 64.3 230 26.1
Potri.006G073000 Populus trichocarpa HOM05D002290 ORTHO05D002532 2.1e-08 64.3 214 29.0
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.8e-08 63.9 347 25.1
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 2.8e-08 63.9 347 25.1
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 4.7e-08 63.2 208 28.8
arahy.Tifrunner.gnm1.ann1.H71861 Arachis hypogaea HOM05D002290 ORTHO05D002532 6.2e-08 62.8 208 26.0
Potri.018G140100 Populus trichocarpa HOM05D002290 ORTHO05D002532 6.2e-08 62.8 213 29.6
TPR.G12131 Trifolium pratense HOM05D002290 ORTHO05D002532 8.1e-08 62.4 240 25.0
Glyma.13G182900 Glycine max HOM05D002290 ORTHO05D002532 1.1e-07 62.0 229 27.5
Hund27202 Selenicereus undatus HOM05D002290 ORTHO05D002532 1.1e-07 62.0 360 25.8
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 1.1e-07 62.0 154 29.2
Zm00001eb001070 Zea mays HOM05D002290 ORTHO05D002532 1.4e-07 61.6 200 28.0
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 1.8e-07 61.2 216 28.2
Phvul.002G225801 Phaseolus vulgaris HOM05D002290 ORTHO05D002532 1.8e-07 61.2 213 27.2
ECA246G3661 Erigeron canadensis HOM05D002290 ORTHO05D002532 4.0e-07 60.1 310 26.1
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 4.0e-07 60.1 298 24.8
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 4.0e-07 60.1 298 24.8
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 4.0e-07 60.1 217 25.8
TPR.G38405 Trifolium pratense HOM05D002290 ORTHO05D002532 4.0e-07 60.1 236 25.4
Aa31LG1G27800 Aethionema arabicum HOM05D002290 ORTHO05D002532 9.0e-07 58.9 237 27.4
Migut.A00644 Erythranthe guttata HOM05D002290 ORTHO05D002532 9.0e-07 58.9 335 26.9
Thecc.03G297400 Theobroma cacao HOM05D002290 ORTHO05D002532 9.0e-07 58.9 217 28.1
CAN.G532.120 Capsicum annuum HOM05D002290 ORTHO05D002532 1.2e-06 58.5 227 25.1
Zm00001eb021300 Zea mays HOM05D002290 ORTHO05D002532 1.2e-06 58.5 153 30.1
Migut.E01249 Erythranthe guttata HOM05D002290 ORTHO05D002532 1.5e-06 58.2 252 24.6
THA.LOC104821813 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.5e-06 58.2 314 25.8
AUR62004481 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.0e-06 57.8 220 27.3
Thhalv10001675m.g Eutrema salsugineum HOM05D002290 ORTHO05D012775 2.6e-06 57.4 73 52.1
Aa31sc1839G10 Aethionema arabicum HOM05D002290 ORTHO05D002532 3.4e-06 57.0 254 28.0
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 3.4e-06 57.0 178 31.5
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 3.4e-06 57.0 243 25.1
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 4.4e-06 56.6 261 25.3
A06p28750 Brassica napus HOM05D002290 ORTHO05D002532 4.4e-06 56.6 214 25.2
Aqoxy5G04225 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 5.8e-06 56.2 258 26.4
Lsat_1_v5_gn_3_24221 Lactuca sativa HOM05D002290 ORTHO05D002532 5.8e-06 56.2 155 27.1
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 7.6e-06 55.8 194 26.3
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 7.6e-06 55.8 345 24.3
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 7.6e-06 55.8 262 26.0


User provided reference genes

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