Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12503 Brassica carinata HOM05D002131 ORTHO05D002141 2.0e-40 168.7 89 100.0
BcaB02g09163 Brassica carinata HOM05D002131 ORTHO05D002141 6.3e-34 147.1 80 97.5
BcaB06g27218 Brassica carinata HOM05D002131 ORTHO05D002141 2.4e-33 145.2 80 96.2
BcaC06g35610 Brassica carinata HOM05D002131 ORTHO05D002141 2.4e-33 145.2 80 96.2
BraA09t36423Z Brassica rapa HOM05D002131 ORTHO05D002141 3.7e-26 121.3 86 80.2
BraA02t09175Z Brassica rapa HOM05D002131 ORTHO05D002141 4.8e-26 120.9 85 83.5
A09p07750 Brassica napus HOM05D002131 ORTHO05D002141 1.4e-25 119.4 85 80.0
C09p08650 Brassica napus HOM05D002131 ORTHO05D002141 4.5e-24 114.4 84 77.4
BcaC01g01773 Brassica carinata HOM05D002131 ORTHO05D002141 3.8e-23 111.3 89 71.9
C03p72040 Brassica napus HOM05D002131 ORTHO05D002141 3.8e-23 111.3 89 71.9
BolC3t19503H Brassica oleracea HOM05D002131 ORTHO05D002141 3.8e-23 111.3 89 71.9
BcaB01g00873 Brassica carinata HOM05D002131 ORTHO05D002141 1.5e-22 109.4 86 73.3
Carub.0005s1393 Capsella rubella HOM05D002131 ORTHO05D002141 1.9e-22 109.0 108 62.0
Thhalv10010295m.g Eutrema salsugineum HOM05D002131 ORTHO05D002141 1.9e-22 109.0 89 69.7
A06p19830 Brassica napus HOM05D002131 ORTHO05D002141 3.2e-22 108.2 86 72.1
BraA06t25061Z Brassica rapa HOM05D002131 ORTHO05D002141 3.2e-22 108.2 86 72.1
CARHR156500 Cardamine hirsuta HOM05D002131 ORTHO05D002141 7.2e-22 107.1 89 69.7
AL5G27110 Arabidopsis lyrata HOM05D002131 ORTHO05D002141 9.4e-22 106.7 86 69.8
AT3G47820 Arabidopsis thaliana HOM05D002131 ORTHO05D002141 1.2e-21 106.3 86 69.8
Sp5g14140 Schrenkiella parvula HOM05D002131 ORTHO05D002141 1.2e-21 106.3 86 72.1
BcaB02g09162 Brassica carinata HOM05D002131 ORTHO05D002141 4.7e-21 104.4 80 76.2
BcaNung01391 Brassica carinata HOM05D002131 ORTHO05D002141 8.0e-21 103.6 81 76.5
Aa31LG4G16470 Aethionema arabicum HOM05D002131 ORTHO05D002141 1.3e-18 96.3 64 76.6
Aa31LG1G16780 Aethionema arabicum HOM05D002131 ORTHO05D002141 1.6e-16 89.4 86 60.5
BcaB07g29848 Brassica carinata HOM05D002131 ORTHO05D002141 2.9e-15 85.1 64 71.9
CARHR279110 Cardamine hirsuta HOM05D002131 ORTHO05D002141 1.5e-14 82.8 64 67.2
AUR62032080 Chenopodium quinoa HOM05D002131 ORTHO05D002141 2.5e-14 82.0 84 53.6
AL8G42720 Arabidopsis lyrata HOM05D002131 ORTHO05D002141 9.5e-14 80.1 64 65.6
THA.LOC104805417 Tarenaya hassleriana HOM05D002131 ORTHO05D002141 9.5e-14 80.1 90 50.0
AUR62041853 Chenopodium quinoa HOM05D002131 ORTHO05D002141 1.2e-13 79.7 84 52.4
Carub.0008s2604 Capsella rubella HOM05D002131 ORTHO05D002141 1.6e-13 79.3 64 65.6
AT5G65200 Arabidopsis thaliana HOM05D002131 ORTHO05D002141 2.1e-13 79.0 64 64.1
Thhalv10003938m.g Eutrema salsugineum HOM05D002131 ORTHO05D002141 2.1e-13 79.0 64 64.1
Sp2g28280 Schrenkiella parvula HOM05D002131 ORTHO05D002141 6.1e-13 77.4 62 64.5
CANSAT80G2042 Cannabis sativa HOM05D002131 ORTHO05D002141 1.8e-12 75.9 64 54.7
A02p43740 Brassica napus HOM05D002131 ORTHO05D002141 8.9e-12 73.6 60 65.0
C02p63880 Brassica napus HOM05D002131 ORTHO05D002141 8.9e-12 73.6 60 65.0
BraA02t09298Z Brassica rapa HOM05D002131 ORTHO05D002141 8.9e-12 73.6 60 65.0
Sabra17G0059900 Salix brachista HOM05D002131 ORTHO05D002141 1.5e-11 72.8 69 52.2
Peaxi162Scf00700g00630 Petunia axillaris HOM05D002131 ORTHO05D002141 2.0e-11 72.4 63 55.6
EL10Ac2g03385 Beta vulgaris HOM05D002131 ORTHO05D002141 3.4e-11 71.6 64 56.2
BcaC03g18317 Brassica carinata HOM05D002131 ORTHO05D002141 4.4e-11 71.2 60 61.7
Hund12522 Selenicereus undatus HOM05D002131 ORTHO05D002141 4.4e-11 71.2 75 54.7
Sp2g25730 Schrenkiella parvula HOM05D002131 ORTHO05D002141 9.8e-11 70.1 86 53.5
Sc06g0002590 Simmondsia chinensis HOM05D002131 ORTHO05D002141 1.7e-10 69.3 80 48.8
RcHm_v2.0_Chr7g0179681 Rosa chinensis HOM05D002131 ORTHO05D002141 2.8e-10 68.6 64 51.6
FAN13G1329 Fragaria x ananassa HOM05D002131 ORTHO05D002141 3.7e-10 68.2 64 51.6
FAN18G4395 Fragaria x ananassa HOM05D002131 ORTHO05D002141 3.7e-10 68.2 64 51.6
Prupe.5G178900 Prunus persica HOM05D002131 ORTHO05D002141 4.9e-10 67.8 65 52.3
FAN08G0536 Fragaria x ananassa HOM05D002131 ORTHO05D002141 6.3e-10 67.4 64 51.6
A02p42440 Brassica napus HOM05D002131 ORTHO05D002141 1.4e-09 66.2 85 54.1
MD06G1180900 Malus domestica HOM05D002131 ORTHO05D002141 2.4e-09 65.5 65 50.8
FvH4_5g16420 Fragaria vesca HOM05D002131 ORTHO05D002141 7.0e-09 63.9 60 51.7
FAN16G0807 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-08 63.2 64 48.4
MD14G1186000 Malus domestica HOM05D002131 ORTHO05D002141 1.6e-08 62.8 63 52.4
AT5G62560 Arabidopsis thaliana HOM05D002131 ORTHO05D002141 2.0e-08 62.4 86 48.8
ATR1149G023 Amborella trichopoda HOM05D002131 ORTHO05D002141 4.5e-08 61.2 67 50.7
AL8G39450 Arabidopsis lyrata HOM05D002131 ORTHO05D002141 7.8e-08 60.5 85 48.2
Carub.0008s2323 Capsella rubella HOM05D002131 ORTHO05D002141 7.8e-08 60.5 85 48.2
FAN09G0967 Fragaria x ananassa HOM05D002131 ORTHO05D002141 7.8e-08 60.5 72 43.1
BcaC03g18164 Brassica carinata HOM05D002131 ORTHO05D002141 1.1e-06 56.6 85 47.1
C02p62330 Brassica napus HOM05D002131 ORTHO05D002141 1.1e-06 56.6 85 47.1
BolC2t12290H Brassica oleracea HOM05D002131 ORTHO05D002141 1.1e-06 56.6 85 47.1
CARHR276340 Cardamine hirsuta HOM05D002131 ORTHO05D002141 1.1e-06 56.6 85 47.1
Thhalv10003926m.g Eutrema salsugineum HOM05D002131 ORTHO05D002141 1.1e-06 56.6 85 47.1
BcaC04g23407 Brassica carinata HOM05D002131 ORTHO05D002141 3.3e-06 55.1 85 45.9
BolC9t53776H Brassica oleracea HOM05D002131 ORTHO05D002141 3.3e-06 55.1 85 45.9
Ciclev10019643m.g Citrus clementina HOM05D002131 ORTHO05D002141 4.3e-06 54.7 38 65.8
PGR044G1285 Punica granatum HOM05D002131 ORTHO05D002141 9.5e-06 53.5 36 66.7


User provided reference genes

Program Settings