Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12502 Brassica carinata HOM05D000059 ORTHO05D039332 2.0e-49 198.7 96 100.0
A02p40890 Brassica napus HOM05D000059 ORTHO05D000128 2.1e-22 109.0 147 44.2
BcaB07g29983 Brassica carinata HOM05D000059 ORTHO05D000128 6.4e-16 87.4 50 84.0
BcaB07g29883 Brassica carinata HOM05D000059 ORTHO05D000128 1.6e-14 82.8 48 81.2
A10p19320 Brassica napus HOM05D000059 ORTHO05D000128 2.1e-14 82.4 47 83.0
BraA10t44009Z Brassica rapa HOM05D000059 ORTHO05D000128 2.1e-14 82.4 47 83.0
BraA02t09037Z Brassica rapa HOM05D000059 ORTHO05D000128 3.0e-13 78.6 42 85.7
BcaB07g29984 Brassica carinata HOM05D000059 ORTHO05D002974 8.6e-13 77.0 42 83.3
Thhalv10004083m.g Eutrema salsugineum HOM05D000059 ORTHO05D000128 8.6e-13 77.0 42 81.0
BraA02t09038Z Brassica rapa HOM05D000059 ORTHO05D000128 1.1e-12 76.6 39 87.2
BcaC03g18018 Brassica carinata HOM05D000059 ORTHO05D000128 1.5e-12 76.3 42 83.3
C02p60800 Brassica napus HOM05D000059 ORTHO05D000128 1.5e-12 76.3 42 83.3
BolC2t12133H Brassica oleracea HOM05D000059 ORTHO05D000128 1.5e-12 76.3 42 83.3
A06p34540 Brassica napus HOM05D000059 ORTHO05D003535 3.3e-12 75.1 50 66.0
BolC9t58415H Brassica oleracea HOM05D000059 ORTHO05D000128 4.3e-12 74.7 42 81.0
Sp2g23610 Schrenkiella parvula HOM05D000059 ORTHO05D000128 4.3e-12 74.7 42 76.2
BcaC03g18017 Brassica carinata HOM05D000059 ORTHO05D000128 5.6e-12 74.3 42 78.6
C02p60810 Brassica napus HOM05D000059 ORTHO05D000128 5.6e-12 74.3 42 78.6
C09p55510 Brassica napus HOM05D000059 ORTHO05D000128 5.6e-12 74.3 42 81.0
BolC2t12134H Brassica oleracea HOM05D000059 ORTHO05D000128 5.6e-12 74.3 42 78.6
BcaC04g19461 Brassica carinata HOM05D000059 ORTHO05D000128 9.6e-12 73.6 42 81.0
A02p40900 Brassica napus HOM05D000059 ORTHO05D000128 9.6e-12 73.6 41 80.5
C03p44320 Brassica napus HOM05D000059 ORTHO05D017557 2.8e-11 72.0 90 45.6
AL6G34880 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 6.2e-11 70.9 42 73.8
A09p06860 Brassica napus HOM05D000059 ORTHO05D000128 6.2e-11 70.9 44 68.2
BraA09t36333Z Brassica rapa HOM05D000059 ORTHO05D000128 6.2e-11 70.9 44 68.2
C02p60820 Brassica napus HOM05D000059 ORTHO05D000128 8.1e-11 70.5 42 76.2
C09p07590 Brassica napus HOM05D000059 ORTHO05D000128 8.1e-11 70.5 42 71.4
AT5G23580 Arabidopsis thaliana HOM05D000059 ORTHO05D000128 1.4e-10 69.7 42 71.4
BcaC04g23505 Brassica carinata HOM05D000059 ORTHO05D000128 1.4e-10 69.7 42 71.4
BolC9t53676H Brassica oleracea HOM05D000059 ORTHO05D000128 1.4e-10 69.7 42 71.4
BcaB07g29882 Brassica carinata HOM05D000059 ORTHO05D000128 1.8e-10 69.3 42 73.8
BcaB04g19857 Brassica carinata HOM05D000059 ORTHO05D000128 3.1e-10 68.6 40 72.5
A02p40930 Brassica napus HOM05D000059 ORTHO05D000128 3.1e-10 68.6 42 73.8
BraA02t09039Z Brassica rapa HOM05D000059 ORTHO05D000128 3.1e-10 68.6 42 73.8
Carub.0006s2136 Capsella rubella HOM05D000059 ORTHO05D000128 4.0e-10 68.2 42 69.0
C07p43960 Brassica napus HOM05D000059 ORTHO05D028036 8.9e-10 67.0 42 66.7
CARHR189970 Cardamine hirsuta HOM05D000059 ORTHO05D000128 3.4e-09 65.1 42 64.3
Sabra19G0001500 Salix brachista HOM05D000059 ORTHO05D000128 1.3e-08 63.2 42 66.7
Sabra19G0011300 Salix brachista HOM05D000059 ORTHO05D000128 1.3e-08 63.2 42 66.7
Cpa.g.sc138.29 Carica papaya HOM05D000059 ORTHO05D000128 3.8e-08 61.6 54 51.9
Cfa013849 Carpinus fangiana HOM05D000059 ORTHO05D000128 3.8e-08 61.6 44 59.1
Haze_22523 Corylus avellana HOM05D000059 ORTHO05D000128 3.8e-08 61.6 44 59.1
Lalb_Chr07g0183971 Lupinus albus HOM05D000059 ORTHO05D000128 4.9e-08 61.2 47 57.4
Potri.T012800 Populus trichocarpa HOM05D000059 ORTHO05D000128 4.9e-08 61.2 48 60.4
Aa31LG11G2990 Aethionema arabicum HOM05D000059 ORTHO05D000128 6.4e-08 60.8 41 63.4
MD09G1176400 Malus domestica HOM05D000059 ORTHO05D000128 8.4e-08 60.5 49 59.2
Manes.13G153100 Manihot esculenta HOM05D000059 ORTHO05D000128 8.4e-08 60.5 49 53.1
Phvul.009G160100 Phaseolus vulgaris HOM05D000059 ORTHO05D000128 1.1e-07 60.1 37 67.6
VMungo1309G2473 Vigna mungo HOM05D000059 ORTHO05D000128 1.1e-07 60.1 33 75.8
Prupe.3G035400 Prunus persica HOM05D000059 ORTHO05D000128 1.4e-07 59.7 45 62.2
THA.LOC104800436 Tarenaya hassleriana HOM05D000059 ORTHO05D000128 1.4e-07 59.7 39 66.7
Thecc.01G147600 Theobroma cacao HOM05D000059 ORTHO05D000128 1.4e-07 59.7 41 63.4
HPP92_002766 Vanilla planifolia HOM05D000059 ORTHO05D000128 1.4e-07 59.7 48 60.4
Lalb_Chr12g0202721 Lupinus albus HOM05D000059 ORTHO05D000128 1.9e-07 59.3 47 53.2
Psat6g187600 Pisum sativum HOM05D000059 ORTHO05D000128 1.9e-07 59.3 45 55.6
CiPaw.07G159700 Carya illinoinensis HOM05D000059 ORTHO05D000128 2.4e-07 58.9 49 53.1
Manes.12G081500 Manihot esculenta HOM05D000059 ORTHO05D000128 2.4e-07 58.9 49 53.1
Cpa.g.sc66.43 Carica papaya HOM05D000059 ORTHO05D028036 3.2e-07 58.5 45 62.2
Ca_10618_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 3.2e-07 58.5 42 57.1
MD17G1150500 Malus domestica HOM05D000059 ORTHO05D039332 3.2e-07 58.5 49 57.1
Sed0025242 Sechium edule HOM05D000059 ORTHO05D000128 3.2e-07 58.5 43 60.5
COL.COLO4_33535 Corchorus olitorius HOM05D000059 ORTHO05D000128 4.2e-07 58.2 41 61.0
Medtr1g096490 Medicago truncatula HOM05D000059 ORTHO05D000128 4.2e-07 58.2 42 57.1
CDE06G1531 Ceratophyllum demersum HOM05D000059 ORTHO05D000128 5.4e-07 57.8 45 60.0
Ciclev10025418m.g Citrus clementina HOM05D000059 ORTHO05D000128 5.4e-07 57.8 47 53.2
Duzib177G0164 Durio zibethinus HOM05D000059 ORTHO05D000128 5.4e-07 57.8 44 56.8
Glyma.06G161200 Glycine max HOM05D000059 ORTHO05D000128 5.4e-07 57.8 51 52.9
Lj5g0018467 Lotus japonicus HOM05D000059 ORTHO05D000128 5.4e-07 57.8 48 52.1
Lalb_Chr02g0141801 Lupinus albus HOM05D000059 ORTHO05D000128 5.4e-07 57.8 39 61.5
Lalb_Chr10g0107681 Lupinus albus HOM05D000059 ORTHO05D000128 5.4e-07 57.8 42 61.9
TPR.G8820 Trifolium pratense HOM05D000059 ORTHO05D000128 5.4e-07 57.8 51 47.1
BcaB07g30436 Brassica carinata HOM05D000059 ORTHO05D091085 7.1e-07 57.4 29 86.2
ClCG09G010600 Citrullus lanatus HOM05D000059 ORTHO05D000128 7.1e-07 57.4 50 54.0
MELO3C024122.2 Cucumis melo HOM05D000059 ORTHO05D000128 7.1e-07 57.4 50 54.0
CsaV3_7G023780 Cucumis sativus L. HOM05D000059 ORTHO05D000128 7.1e-07 57.4 50 54.0
Eucgr.C00538 Eucalyptus grandis HOM05D000059 ORTHO05D000128 7.1e-07 57.4 41 61.0
Gohir.A05G274900 Gossypium hirsutum HOM05D000059 ORTHO05D000128 7.1e-07 57.4 50 48.0
Lj1g0010671 Lotus japonicus HOM05D000059 ORTHO05D000128 9.3e-07 57.0 43 55.8
Lj4g0000784 Lotus japonicus HOM05D000059 ORTHO05D000128 9.3e-07 57.0 37 62.2
Psat5g056280 Pisum sativum HOM05D000059 ORTHO05D000128 9.3e-07 57.0 33 72.7
PGR042G1403 Punica granatum HOM05D000059 ORTHO05D000128 9.3e-07 57.0 39 59.0
Atru.chr3.1472 Acer truncatum HOM05D000059 ORTHO05D000128 1.2e-06 56.6 37 62.2
Aqoxy6G00129 Aquilegia oxysepala HOM05D000059 ORTHO05D000128 1.2e-06 56.6 57 49.1
arahy.Tifrunner.gnm1.ann1.3AM325 Arachis hypogaea HOM05D000059 ORTHO05D000128 1.2e-06 56.6 44 56.8
arahy.Tifrunner.gnm1.ann1.R94L82 Arachis hypogaea HOM05D000059 ORTHO05D000128 1.2e-06 56.6 44 56.8
Eucgr.F02611 Eucalyptus grandis HOM05D000059 ORTHO05D000128 1.2e-06 56.6 35 68.6
PSO170G1188 Papaver somniferum HOM05D000059 ORTHO05D000128 1.2e-06 56.6 47 51.1
PSO782G5404 Papaver somniferum HOM05D000059 ORTHO05D000128 1.2e-06 56.6 47 51.1
Sabra04G0082000 Salix brachista HOM05D000059 ORTHO05D000128 1.2e-06 56.6 37 67.6
BcaB01g02786 Brassica carinata HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
BcaC01g04713 Brassica carinata HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
A03p28620 Brassica napus HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
C03p34600 Brassica napus HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
BolC3t15771H Brassica oleracea HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
BraA03t12062Z Brassica rapa HOM05D000059 ORTHO05D000128 1.6e-06 56.2 44 54.5
Ciclev10000931m.g Citrus clementina HOM05D000059 ORTHO05D000128 1.6e-06 56.2 47 53.2
COL.COLO4_32914 Corchorus olitorius HOM05D000059 ORTHO05D000128 1.6e-06 56.2 50 54.0
FvH4_6g35360 Fragaria vesca HOM05D000059 ORTHO05D000128 1.6e-06 56.2 47 53.2
FAN02G3354 Fragaria x ananassa HOM05D000059 ORTHO05D000128 1.6e-06 56.2 47 53.2
FAN05G1304 Fragaria x ananassa HOM05D000059 ORTHO05D000128 1.6e-06 56.2 47 53.2
FAN14G5671 Fragaria x ananassa HOM05D000059 ORTHO05D000128 1.6e-06 56.2 47 53.2
Lalb_Chr21g0305781 Lupinus albus HOM05D000059 ORTHO05D000128 1.6e-06 56.2 39 59.0
Solyc10g076900.3 Solanum lycopersicum HOM05D000059 ORTHO05D000128 1.6e-06 56.2 152 30.3
Glyma.04G204400 Glycine max HOM05D000059 ORTHO05D000128 2.1e-06 55.8 44 59.1
TWI32G0475 Tripterygium wilfordii HOM05D000059 ORTHO05D000128 2.1e-06 55.8 34 67.6
Carub.0006s2802 Capsella rubella HOM05D000059 ORTHO05D000128 2.7e-06 55.5 39 59.0
CDE08G0509 Ceratophyllum demersum HOM05D000059 ORTHO05D000128 2.7e-06 55.5 38 65.8
Duzib264G0047 Durio zibethinus HOM05D000059 ORTHO05D000128 2.7e-06 55.5 41 58.5
Lj4A820G40 Lonicera japonica HOM05D000059 ORTHO05D000128 2.7e-06 55.5 53 49.1
TAR376G0965 Trochodendron aralioides HOM05D000059 ORTHO05D000128 2.7e-06 55.5 46 52.2
TAR628G0650 Trochodendron aralioides HOM05D000059 ORTHO05D000128 2.7e-06 55.5 38 63.2
AUR62000624 Chenopodium quinoa HOM05D000059 ORTHO05D000128 3.5e-06 55.1 38 60.5
Dinv41713 Davidia involucrata HOM05D000059 ORTHO05D000128 3.5e-06 55.1 44 59.1
Lalb_Chr04g0246901 Lupinus albus HOM05D000059 ORTHO05D000128 3.5e-06 55.1 52 48.1
RcHm_v2.0_Chr2g0146801 Rosa chinensis HOM05D000059 ORTHO05D000128 3.5e-06 55.1 41 58.5
Glyma.10G217000 Glycine max HOM05D000059 ORTHO05D000128 4.6e-06 54.7 32 68.8
Glyma.20G175100 Glycine max HOM05D000059 ORTHO05D000128 4.6e-06 54.7 32 68.8
QL10p038267 Quercus lobata HOM05D000059 ORTHO05D000128 4.6e-06 54.7 36 69.4
VMungo0720G0471 Vigna mungo HOM05D000059 ORTHO05D000128 4.6e-06 54.7 32 68.8
Aa31LG9G14870 Aethionema arabicum HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
AL6G43150 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
AT4G09570 Arabidopsis thaliana HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
CARHR260440 Cardamine hirsuta HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
Thhalv10028598m.g Eutrema salsugineum HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
FAN15G2700 Fragaria x ananassa HOM05D000059 ORTHO05D000128 6.0e-06 54.3 38 57.9
Gohir.D05G277200 Gossypium hirsutum HOM05D000059 ORTHO05D000128 6.0e-06 54.3 49 46.9
Gorai.009G290200 Gossypium raimondii HOM05D000059 ORTHO05D000128 6.0e-06 54.3 49 46.9
MD10G1048300 Malus domestica HOM05D000059 ORTHO05D000128 6.0e-06 54.3 32 65.6
Manes.02G192200 Manihot esculenta HOM05D000059 ORTHO05D000128 6.0e-06 54.3 44 52.3
RcHm_v2.0_Chr6g0272011 Rosa chinensis HOM05D000059 ORTHO05D000128 6.0e-06 54.3 49 51.0
Sp6g08040 Schrenkiella parvula HOM05D000059 ORTHO05D000128 6.0e-06 54.3 39 56.4
AL1G50560 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
AT1G35670 Arabidopsis thaliana HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
BcaB03g13656 Brassica carinata HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
BcaC05g27720 Brassica carinata HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
A05p23570 Brassica napus HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
C05p37020 Brassica napus HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
BolC5t32452H Brassica oleracea HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
BraA05t21225Z Brassica rapa HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
Carub.0001s3334 Capsella rubella HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
CAN.G234.3 Capsicum annuum HOM05D000059 ORTHO05D000128 7.8e-06 53.9 53 47.2
CARHR034460 Cardamine hirsuta HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
DCAR_001047 Daucus carota HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
Thhalv10001816m.g Eutrema salsugineum HOM05D000059 ORTHO05D000128 7.8e-06 53.9 39 56.4
Glyma.02G311800 Glycine max HOM05D000059 ORTHO05D000128 7.8e-06 53.9 53 49.1
Gohir.A05G375200 Gossypium hirsutum HOM05D000059 ORTHO05D000128 7.8e-06 53.9 41 53.7
Gohir.D04G040500 Gossypium hirsutum HOM05D000059 ORTHO05D000128 7.8e-06 53.9 41 53.7
Gorai.012G045700 Gossypium raimondii HOM05D000059 ORTHO05D000128 7.8e-06 53.9 41 53.7
MD05G1041800 Malus domestica HOM05D000059 ORTHO05D000128 7.8e-06 53.9 38 57.9
Manes.18G101000 Manihot esculenta HOM05D000059 ORTHO05D000128 7.8e-06 53.9 52 46.2
QL02p033743 Quercus lobata HOM05D000059 ORTHO05D000128 7.8e-06 53.9 49 49.0


User provided reference genes

Program Settings