Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-81 306.6 165 100.0
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-81 305.4 165 99.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.4e-81 304.7 165 99.4
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-76 289.7 165 95.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-75 286.6 165 95.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-70 268.9 167 91.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.6e-57 225.7 166 77.1
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 9.5e-52 207.2 173 71.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.0e-49 199.5 171 71.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.7e-48 195.3 166 71.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-35 152.9 175 55.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-34 150.6 175 54.9
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-33 146.0 178 53.4
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.4e-33 145.6 177 53.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.9e-33 144.1 178 53.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-32 143.7 187 54.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-32 141.7 162 55.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.2e-30 137.1 185 53.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.6e-30 135.2 167 52.7
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 7.8e-30 134.4 179 52.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-29 134.0 179 52.0
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 5.1e-29 131.7 182 52.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.6e-29 131.3 188 50.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-28 129.4 177 51.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.3e-28 128.6 202 48.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.6e-28 127.5 174 53.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.3e-27 127.1 166 53.0
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-27 127.1 165 52.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-26 123.6 159 52.2
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-26 123.2 162 50.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 6.9e-26 121.3 177 48.6
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-25 119.4 160 50.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.1e-19 99.8 198 37.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.8e-19 99.4 190 41.1
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-17 94.0 184 47.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.5e-17 93.6 182 40.7
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.5e-17 93.6 190 40.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.6e-17 91.3 196 38.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.6e-17 91.3 191 38.2
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.9e-17 90.9 196 38.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-16 90.5 185 41.1
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.7e-16 90.1 191 37.7
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-16 89.4 165 42.4
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.9e-16 89.4 187 40.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.9e-16 88.6 187 38.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 4.9e-16 88.6 193 38.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.9e-16 88.6 183 39.9
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.4e-16 88.2 184 42.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.1e-15 87.4 186 41.4
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.4e-15 87.0 187 39.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.9e-15 86.7 186 40.3
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-15 86.7 187 36.4
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-15 86.3 179 40.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-15 86.3 197 38.6
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.4e-15 86.3 179 40.8
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.4e-15 86.3 170 42.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 3.2e-15 85.9 190 40.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.2e-15 85.5 189 40.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.2e-15 85.5 179 40.2
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.5e-15 85.1 193 39.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.5e-15 85.1 121 48.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.5e-15 85.1 201 38.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 9.3e-15 84.3 165 42.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-14 84.0 179 39.1
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.6e-14 83.6 188 38.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.6e-14 83.6 200 33.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-14 83.6 175 38.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-14 83.6 187 36.9
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.1e-14 83.2 195 36.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.1e-14 83.2 180 40.6
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.7e-14 82.8 182 39.6
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.7e-14 82.8 175 40.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 2.7e-14 82.8 177 38.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-14 82.4 182 39.6
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.6e-14 82.0 178 37.6
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 6.0e-14 81.6 73 56.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.0e-14 81.6 186 38.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.0e-13 80.9 187 37.4
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.3e-13 80.5 178 39.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.8e-13 80.1 167 36.5
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.3e-13 79.7 175 42.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.3e-13 79.7 177 40.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 3.0e-13 79.3 194 34.5
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.9e-13 79.0 185 36.8
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.9e-13 79.0 183 36.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.1e-13 78.6 185 36.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.1e-13 78.6 186 38.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.7e-13 78.2 170 42.9
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 6.7e-13 78.2 183 38.8
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 6.7e-13 78.2 177 39.5
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 8.7e-13 77.8 188 38.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.7e-13 77.8 183 35.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.7e-13 77.8 166 40.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.7e-13 77.8 166 40.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 8.7e-13 77.8 183 36.1
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.1e-12 77.4 198 35.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.5e-12 77.0 185 35.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.5e-12 77.0 175 35.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.9e-12 76.6 180 36.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.9e-12 76.6 202 36.1
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.5e-12 76.3 191 37.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.5e-12 76.3 185 40.0
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.3e-12 75.9 188 36.7
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 4.3e-12 75.5 209 35.4
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.3e-12 75.5 186 36.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 5.6e-12 75.1 170 37.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.6e-12 75.1 185 36.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 5.6e-12 75.1 174 39.1
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.4e-12 74.7 184 35.9
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 9.6e-12 74.3 196 35.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 9.6e-12 74.3 168 38.7
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 9.6e-12 74.3 177 36.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 9.6e-12 74.3 194 34.5
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.6e-11 73.6 177 37.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.6e-11 73.6 176 39.8
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.1e-11 73.2 185 34.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.8e-11 72.8 170 40.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.7e-11 72.4 202 34.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.8e-11 72.0 169 39.6
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 6.2e-11 71.6 183 35.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.1e-11 71.2 193 33.7
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.1e-10 70.9 190 32.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.1e-10 70.9 193 33.2
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.4e-10 70.5 188 36.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.4e-10 70.5 193 34.7
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-10 70.5 144 36.8
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-10 70.5 109 45.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.8e-10 70.1 177 37.9
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-10 70.1 76 52.6
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 3.1e-10 69.3 209 35.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 4.0e-10 68.9 183 35.5
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.0e-10 68.9 209 35.4
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.0e-10 68.9 84 45.2
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.3e-10 68.6 208 31.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.3e-10 68.6 208 32.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.3e-10 68.6 172 35.5
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.3e-10 68.6 175 37.1
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.9e-10 68.2 143 37.8
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-10 68.2 193 33.2
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-10 68.2 193 33.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 6.9e-10 68.2 187 34.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.2e-09 67.4 213 32.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-09 67.4 169 36.7
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.5e-09 67.0 174 33.9
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.5e-09 67.0 181 33.7
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.0e-09 66.6 207 32.4
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-09 66.6 180 35.6
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-09 66.2 174 35.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.4e-09 65.9 165 35.8
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.5e-09 65.5 195 31.8
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.5e-09 65.5 193 34.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 5.8e-09 65.1 190 30.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.8e-09 65.1 190 30.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.8e-09 65.1 190 30.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.0e-08 64.3 177 34.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.3e-08 63.9 224 32.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.3e-08 63.9 149 34.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-08 63.9 70 54.3
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.3e-08 63.9 177 34.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.9e-08 62.8 179 37.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.9e-08 62.8 169 35.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 6.5e-08 61.6 184 34.8
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.1e-07 60.8 70 48.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-07 60.8 75 49.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.4e-07 60.5 179 32.4
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-07 60.5 216 32.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-07 60.5 216 32.4
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-07 60.1 217 32.3
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.9e-07 60.1 67 52.2
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 3.2e-07 59.3 94 44.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 3.2e-07 59.3 126 38.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.2e-07 58.9 60 51.7
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.5e-07 58.5 157 36.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 5.5e-07 58.5 87 39.1
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 9.3e-07 57.8 90 46.7
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.2e-06 57.4 37 75.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.1e-06 56.6 192 30.7
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.0e-06 55.1 189 31.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.9e-06 54.7 81 44.4


User provided reference genes

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