Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 2.0e-155 552.4 268 100.0
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 2.0e-155 552.4 268 100.0
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 1.7e-154 549.3 268 99.6
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 5.9e-144 514.2 269 93.7
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-142 509.6 283 91.2
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 1.8e-137 492.7 291 86.3
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 7.5e-131 470.7 280 85.7
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 7.5e-131 470.7 278 86.7
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 3.7e-130 468.4 282 85.1
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 1.4e-129 466.5 278 86.0
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 3.1e-129 465.3 281 85.4
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 2.0e-128 462.6 285 84.9
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 2.0e-128 462.6 281 85.1
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 3.5e-128 461.8 284 84.5
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 1.0e-127 460.3 285 84.2
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 3.6e-125 451.8 287 81.5
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 4.7e-125 451.4 290 80.7
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 8.0e-117 424.1 291 77.7
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 1.7e-114 416.4 267 82.4
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 4.3e-110 401.7 297 71.0
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.9e-105 386.3 298 68.5
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.4e-105 386.0 277 70.0
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.0e-103 380.6 277 69.0
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 5.1e-103 378.3 278 69.1
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 1.6e-101 373.2 291 64.9
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 3.6e-101 372.1 295 65.4
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 4.7e-101 371.7 299 63.5
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 6.8e-100 367.9 298 63.4
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 2.2e-98 362.8 261 69.3
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.9e-98 361.7 303 63.0
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 8.4e-98 360.9 289 64.4
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 8.4e-98 360.9 292 64.4
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 1.1e-97 360.5 200 82.0
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 2.4e-97 359.4 203 79.3
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 2.4e-97 359.4 295 64.1
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 4.2e-97 358.6 268 67.5
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 1.6e-96 356.7 292 62.7
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 4.6e-96 355.1 281 64.4
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.6e-96 355.1 301 61.1
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 4.6e-96 355.1 201 80.1
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.0e-95 354.0 235 71.9
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 1.0e-95 354.0 255 69.0
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 1.7e-95 353.2 300 62.3
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 3.9e-95 352.1 285 64.2
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 5.1e-95 351.7 262 67.6
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 5.1e-95 351.7 284 62.3
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 6.6e-95 351.3 296 62.5
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.9e-94 349.7 204 77.5
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.9e-94 349.7 231 71.9
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 7.3e-94 347.8 273 64.1
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 7.3e-94 347.8 270 65.2
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 2.8e-93 345.9 296 62.2
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 3.6e-93 345.5 202 77.2
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 4.7e-93 345.1 274 64.6
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 6.2e-93 344.7 269 64.3
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 1.1e-92 344.0 224 71.9
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 1.4e-92 343.6 280 64.3
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 1.4e-92 343.6 283 62.2
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 1.4e-92 343.6 269 64.7
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 3.1e-92 342.4 282 62.4
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 4.0e-92 342.0 283 61.8
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 1.5e-91 340.1 277 61.7
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 4.4e-91 338.6 290 61.4
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 4.4e-91 338.6 292 59.6
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 5.8e-91 338.2 221 71.9
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 7.6e-91 337.8 277 62.5
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.7e-90 336.7 303 59.4
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 3.8e-90 335.5 200 75.0
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 8.4e-90 334.3 273 65.2
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 8.4e-90 334.3 212 72.2
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 1.1e-89 334.0 305 57.4
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 1.1e-89 334.0 228 69.7
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 1.9e-89 333.2 196 75.5
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 2.4e-89 332.8 292 56.8
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 2.4e-89 332.8 291 60.5
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 4.6e-88 328.6 285 62.1
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 7.8e-88 327.8 276 60.9
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 3.9e-87 325.5 264 61.7
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 8.7e-87 324.3 237 67.5
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 4.8e-85 318.5 270 62.6
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 8.1e-85 317.8 236 66.1
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 2.4e-84 316.2 262 63.0
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 2.0e-83 313.2 260 63.5
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 2.0e-83 313.2 196 73.5
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 3.4e-83 312.4 195 73.8
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 9.9e-83 310.8 210 68.1
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 5.4e-81 305.1 160 87.5
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 5.4e-81 305.1 195 73.3
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.6e-80 303.5 289 56.1
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 2.7e-80 302.8 195 70.3
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 3.5e-80 302.4 231 63.6
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 3.5e-80 302.4 257 64.2
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 6.0e-80 301.6 200 68.0
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 7.9e-80 301.2 258 61.2
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 6.7e-79 298.1 259 64.1
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 8.7e-79 297.7 278 59.0
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 2.5e-78 296.2 236 63.1
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 2.6e-75 286.2 216 62.5
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 9.9e-75 284.3 223 64.1
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 2.9e-74 282.7 266 54.5
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 3.8e-74 282.3 263 54.4
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 3.8e-74 282.3 194 65.5
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 7.9e-72 274.6 267 55.8
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 6.7e-71 271.6 157 80.3
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 2.1e-69 266.5 257 56.8
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 1.5e-67 260.4 195 62.1
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 1.0e-66 257.7 157 73.2
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 2.2e-66 256.5 157 74.5
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 3.8e-66 255.8 151 78.8
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 6.5e-66 255.0 156 75.0
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 4.3e-62 242.3 254 48.8
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 1.8e-60 236.9 320 46.2
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 6.1e-56 221.9 141 74.5
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 7.9e-56 221.5 246 50.4
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 5.7e-54 215.3 197 51.8
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 7.4e-54 214.9 173 61.3
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 2.8e-53 213.0 138 76.1
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 4.1e-52 209.1 124 79.0
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 3.8e-50 202.6 115 89.6
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 3.8e-50 202.6 115 89.6
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.9e-49 200.3 194 52.6
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 7.9e-48 194.9 124 75.0
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 8.2e-45 184.9 111 73.9
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.4e-44 184.1 138 63.8
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 3.5e-43 179.5 139 61.9
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 5.9e-43 178.7 117 74.4
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 3.2e-41 172.9 134 61.9
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 2.5e-33 146.7 158 50.6
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.0e-31 141.4 151 55.6
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 1.4e-31 141.0 159 44.7
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 9.7e-30 134.8 78 85.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 7.0e-28 128.6 110 63.6
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 2.0e-22 110.5 63 87.3
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.9e-17 94.0 79 63.3
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 2.5e-17 93.6 44 86.4
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 4.2e-17 92.8 167 32.9
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.5e-09 67.0 129 41.1
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 1.4e-07 61.2 165 29.7
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 4.0e-07 59.7 165 29.7
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 6.8e-07 58.9 164 29.3
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 6.8e-07 58.9 164 29.3
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 6.8e-07 58.9 164 29.3
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 8.9e-07 58.5 201 29.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 8.9e-07 58.5 180 28.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.2e-06 58.2 181 29.3
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.2e-06 58.2 187 28.3
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.0e-06 57.4 181 28.7
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.0e-06 57.4 200 29.5
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.0e-06 57.4 200 29.5
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.0e-06 57.4 182 28.6
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 2.0e-06 57.4 198 28.8
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.0e-06 57.4 137 30.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.0e-06 57.4 137 30.7
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 2.0e-06 57.4 137 30.7
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.6e-06 57.0 136 30.9
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.6e-06 57.0 181 27.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.4e-06 56.6 183 30.6
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 3.4e-06 56.6 183 30.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.4e-06 56.6 139 30.2
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.4e-06 56.6 136 30.9
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 4.4e-06 56.2 188 29.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.4e-06 56.2 198 27.8
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 4.4e-06 56.2 182 28.0
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.4e-06 56.2 139 28.8
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 4.4e-06 56.2 183 29.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 4.4e-06 56.2 181 29.3
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 5.8e-06 55.8 183 31.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 5.8e-06 55.8 183 31.1
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 5.8e-06 55.8 178 28.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.8e-06 55.8 107 31.8
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 7.5e-06 55.5 182 29.7
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 7.5e-06 55.5 181 29.3
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 7.5e-06 55.5 140 32.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 9.8e-06 55.1 198 28.3
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 9.8e-06 55.1 200 29.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 9.8e-06 55.1 180 28.9
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.8e-06 55.1 181 27.6


User provided reference genes

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