Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 5.6e-153 544.3 280 100.0
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 7.3e-145 517.3 283 95.4
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 7.3e-145 517.3 283 95.4
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 2.5e-137 492.3 284 90.8
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.4e-132 476.5 284 89.1
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 9.9e-126 453.8 282 85.1
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 6.4e-125 451.1 286 85.0
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.2e-115 420.2 289 77.9
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 5.3e-111 404.8 281 75.8
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.6e-107 393.3 289 72.3
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 5.7e-105 384.8 284 72.5
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 5.7e-105 384.8 282 73.0
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.1e-104 382.9 284 72.2
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 3.0e-98 362.5 291 68.0
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 1.4e-84 317.0 284 59.5
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 2.2e-80 303.1 266 56.4
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 9.1e-79 297.7 279 56.6
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 2.0e-78 296.6 235 61.3
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.0e-78 296.6 253 60.9
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 3.5e-78 295.8 275 55.6
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 3.5e-78 295.8 235 62.1
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.2e-77 293.1 277 57.8
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 3.8e-77 292.4 266 58.3
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 3.8e-77 292.4 274 56.6
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 5.0e-77 292.0 211 64.9
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 6.5e-77 291.6 288 54.5
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 2.5e-76 289.7 239 62.8
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 7.2e-76 288.1 281 56.6
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 7.2e-76 288.1 270 55.2
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 9.4e-76 287.7 246 59.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 2.1e-75 286.6 276 55.4
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.1e-75 286.6 218 62.4
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 6.1e-75 285.0 280 53.6
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.0e-74 284.3 258 59.7
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.0e-74 284.3 261 55.6
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.0e-74 284.3 218 61.5
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.3e-74 283.1 250 59.2
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 8.8e-74 281.2 218 61.0
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 8.8e-74 281.2 262 56.5
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 1.5e-73 280.4 263 57.0
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 7.4e-73 278.1 265 55.8
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 9.7e-73 277.7 213 60.6
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.3e-72 277.3 263 57.0
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.2e-72 276.6 257 56.4
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.2e-72 276.6 257 56.0
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 3.7e-72 275.8 266 55.3
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.1e-71 274.2 265 53.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 1.8e-71 273.5 263 55.5
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.4e-71 273.1 212 62.7
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 2.4e-71 273.1 267 51.7
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.2e-70 270.8 277 54.2
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.6e-70 269.6 215 62.8
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 4.5e-70 268.9 246 55.7
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 1.3e-69 267.3 250 56.4
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 2.9e-69 266.2 212 59.9
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 6.5e-69 265.0 227 60.4
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 6.5e-69 265.0 175 69.1
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 8.5e-69 264.6 267 53.9
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 1.5e-68 263.8 265 52.8
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.2e-68 262.7 252 54.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 3.2e-68 262.7 261 53.3
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 4.2e-68 262.3 213 60.6
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 5.5e-68 261.9 215 58.1
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 7.2e-68 261.5 220 60.5
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 9.4e-68 261.2 220 58.6
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 2.7e-67 259.6 215 59.5
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.6e-67 259.2 264 52.7
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 3.6e-67 259.2 263 52.9
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 4.7e-67 258.8 217 58.5
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 6.1e-67 258.5 261 53.3
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 8.0e-67 258.1 220 59.1
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.8e-66 256.9 219 57.5
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 4.0e-66 255.8 201 59.2
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 5.2e-66 255.4 260 51.2
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 5.2e-66 255.4 210 61.0
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.2e-65 254.2 174 66.7
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 5.7e-65 251.9 241 53.9
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 9.8e-65 251.1 249 51.8
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.8e-64 249.6 190 65.8
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 6.3e-64 248.4 253 54.5
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.8e-63 246.9 255 51.4
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 5.4e-63 245.4 236 53.4
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 4.5e-62 242.3 215 55.3
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 1.7e-61 240.4 192 59.4
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 1.7e-61 240.4 206 57.8
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 3.8e-61 239.2 262 51.5
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.5e-60 237.3 199 58.3
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 1.9e-60 236.9 217 58.1
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 4.2e-60 235.7 187 64.2
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 2.7e-59 233.0 180 65.0
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.4e-58 230.7 186 62.9
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.8e-58 230.3 187 62.6
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 1.0e-53 214.5 242 50.4
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.7e-53 213.8 260 46.5
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.5e-52 209.9 231 50.2
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 5.5e-52 208.8 204 52.5
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.2e-51 207.6 280 44.6
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.0e-50 204.5 172 58.7
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 1.2e-49 201.1 175 58.3
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.4e-47 194.1 164 56.7
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 4.1e-47 192.6 251 42.6
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.1e-42 176.4 249 41.8
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 2.0e-41 173.7 195 46.2
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 9.8e-41 171.4 125 65.6
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.1e-39 166.0 139 63.3
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 4.1e-39 166.0 174 53.4
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.0e-37 161.4 166 48.2
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.7e-37 160.6 285 40.7
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.3e-36 156.4 313 37.7
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.7e-35 152.5 212 40.6
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 3.1e-34 149.8 93 76.3
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 6.8e-34 148.7 93 76.3
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 2.6e-33 146.7 96 68.8
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 9.2e-31 138.3 129 51.2
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 4.6e-30 136.0 138 51.4
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 6.0e-30 135.6 212 38.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.3e-28 129.4 92 65.2
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.2e-27 127.9 146 45.9
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 7.6e-25 118.6 97 59.8
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 1.7e-24 117.5 98 55.1
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 8.6e-21 105.1 137 46.7
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.3e-20 102.8 61 75.4
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.6e-19 100.9 68 73.5
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 2.3e-13 80.5 198 33.8
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 1.9e-12 77.4 45 86.7
C03p28590 Brassica napus HOM05D006222 ORTHO05D007677 3.2e-07 60.1 51 58.8
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 3.5e-06 56.6 51 52.9


User provided reference genes

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