Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 7.4e-55 216.9 101 100.0
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-53 212.2 102 99.0
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 5.3e-53 210.7 102 98.0
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 2.6e-52 208.4 100 98.0
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 1.3e-40 169.5 102 79.4
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.4e-37 159.5 96 75.0
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-37 159.1 102 75.5
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 5.3e-37 157.5 102 75.5
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 1.5e-36 156.0 102 74.5
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 1.5e-36 156.0 102 74.5
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 1.0e-35 153.3 102 70.6
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 1.9e-34 149.1 99 69.7
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 5.5e-34 147.5 103 71.8
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 1.6e-33 146.0 102 67.6
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 1.6e-33 146.0 102 67.6
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.3e-32 142.1 96 65.6
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 8.7e-32 140.2 90 70.0
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.1e-31 139.8 90 67.8
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.9e-31 139.0 96 63.5
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 2.5e-31 138.7 98 69.4
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 3.3e-31 138.3 88 68.2
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 4.3e-31 137.9 86 70.9
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 5.7e-31 137.5 90 71.1
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 9.7e-31 136.7 88 67.0
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 1.6e-30 136.0 106 62.3
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 1.6e-30 136.0 91 67.0
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 2.8e-30 135.2 92 69.6
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 2.8e-30 135.2 92 69.6
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 2.8e-30 135.2 92 69.6
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.7e-30 134.8 89 68.5
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 3.7e-30 134.8 100 65.0
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 6.3e-30 134.0 89 68.5
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 8.2e-30 133.7 91 62.6
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 1.4e-29 132.9 102 65.7
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 1.4e-29 132.9 102 65.7
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 1.8e-29 132.5 78 73.1
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 1.8e-29 132.5 88 64.8
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-29 132.5 88 64.8
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.4e-29 132.1 87 67.8
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-29 132.1 88 65.9
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 2.4e-29 132.1 90 64.4
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 2.4e-29 132.1 90 64.4
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 4.1e-29 131.3 87 66.7
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 4.1e-29 131.3 75 73.3
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 4.1e-29 131.3 102 65.7
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 5.3e-29 131.0 94 64.9
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 6.9e-29 130.6 84 66.7
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.9e-29 130.6 91 68.1
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 9.0e-29 130.2 88 68.2
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 9.0e-29 130.2 96 63.5
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 9.0e-29 130.2 88 68.2
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 9.0e-29 130.2 88 68.2
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 9.0e-29 130.2 96 60.4
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 1.5e-28 129.4 102 64.7
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-28 129.0 91 68.1
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 2.0e-28 129.0 89 68.5
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.6e-28 128.6 101 58.4
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.4e-28 128.3 89 66.3
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 4.5e-28 127.9 107 62.6
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 4.5e-28 127.9 96 60.4
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 2.2e-27 125.6 94 62.8
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 6.5e-27 124.0 88 65.9
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-26 122.9 98 62.2
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 5.5e-26 120.9 90 61.1
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 9.4e-26 120.2 90 62.2
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.7e-25 118.6 90 58.9
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 1.0e-24 116.7 75 69.3
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 1.0e-24 116.7 90 57.8
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.4e-24 116.3 65 72.3
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.4e-24 116.3 75 60.0
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.4e-24 116.3 69 76.8
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.4e-24 116.3 95 57.9
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.0e-23 112.5 90 62.2
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.0e-23 112.5 91 56.0
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.3e-22 109.8 89 59.6
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.3e-22 109.8 90 57.8
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 1.8e-21 105.9 72 72.2
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 3.1e-21 105.1 77 55.8
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 3.1e-21 105.1 95 49.5
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.6e-17 91.7 88 51.1
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 1.8e-16 89.4 86 47.7
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 5.1e-16 87.8 87 47.1
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 3.3e-15 85.1 89 52.8
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.3e-15 85.1 91 49.5
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 4.4e-15 84.7 93 46.2
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 5.7e-15 84.3 86 45.3
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 1.3e-14 83.2 86 46.5
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 2.2e-14 82.4 87 46.0
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 3.7e-14 81.6 83 43.4
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 4.8e-14 81.3 87 46.0
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 4.8e-14 81.3 87 46.0
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 4.8e-14 81.3 87 46.0
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 4.8e-14 81.3 87 47.1
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 6.3e-14 80.9 87 46.0
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 6.3e-14 80.9 87 46.0
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 8.2e-14 80.5 91 44.0
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 1.1e-13 80.1 86 44.2
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 2.4e-13 79.0 90 44.4
C04p70470 Brassica napus HOM05D007394 ORTHO05D009234 5.3e-13 77.8 94 48.9
Thhalv10001701m.g Eutrema salsugineum HOM05D007394 ORTHO05D032247 9.1e-13 77.0 87 43.7
A04p32760 Brassica napus HOM05D007394 ORTHO05D009234 1.2e-12 76.6 94 47.9
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 1.2e-12 76.6 88 47.7
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 1.2e-12 76.6 88 47.7
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 1.2e-12 76.6 95 46.3
A04p02110 Brassica napus HOM05D014590 ORTHO05D017585 7.7e-12 73.9 88 46.6
BraA04t15937Z Brassica rapa HOM05D014590 ORTHO05D017585 7.7e-12 73.9 88 46.6
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 2.9e-11 72.0 87 39.1
BcaC02g10070 Brassica carinata HOM05D014590 ORTHO05D017585 2.9e-11 72.0 84 45.2
Carub.0005s2631 Capsella rubella HOM05D014590 ORTHO05D017585 6.5e-11 70.9 90 41.1
BcaC02g07167 Brassica carinata HOM05D007394 ORTHO05D032247 5.5e-10 67.8 87 36.8
C04p33170 Brassica napus HOM05D014590 ORTHO05D017585 2.3e-08 62.4 79 44.3
BolC4t24876H Brassica oleracea HOM05D014590 ORTHO05D017585 2.3e-08 62.4 79 44.3


User provided reference genes

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