Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 4.3e-57 224.6 123 100.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 9.6e-57 223.4 123 99.2
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-56 223.0 122 100.0
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.2e-56 223.0 122 100.0
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 1.8e-55 219.2 122 98.4
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-55 217.6 123 95.9
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 9.0e-55 216.9 120 98.3
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 9.9e-54 213.4 123 96.7
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.2e-53 212.2 122 95.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.4e-53 210.7 122 95.9
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 6.4e-53 210.7 123 95.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 6.4e-53 210.7 117 97.4
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 8.4e-53 210.3 124 95.2
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.9e-52 209.1 122 95.9
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 2.4e-52 208.8 121 95.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 4.2e-52 208.0 123 94.3
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 5.4e-52 207.6 123 93.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 7.1e-52 207.2 121 95.0
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.6e-51 206.1 123 91.1
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-49 199.1 122 91.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.3e-49 198.0 121 92.6
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.5e-46 189.5 118 89.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 4.5e-46 188.0 121 84.3
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 7.6e-46 187.2 123 81.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 7.6e-46 187.2 123 83.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 9.9e-46 186.8 122 81.1
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.3e-45 186.4 121 82.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.7e-45 186.0 118 83.9
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.4e-44 182.2 122 80.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 4.2e-44 181.4 114 83.3
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 4.2e-44 181.4 121 81.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.2e-44 181.4 111 85.6
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 7.1e-44 180.6 118 82.2
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 7.1e-44 180.6 121 80.2
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 80.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.2e-43 179.9 120 80.8
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.6e-43 179.5 123 85.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.6e-43 179.5 118 80.5
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.5e-43 178.3 122 79.5
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-43 177.6 121 78.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 7.9e-43 177.2 123 78.9
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 7.9e-43 177.2 123 78.9
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 7.9e-43 177.2 111 82.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.3e-42 176.4 114 80.7
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-42 176.0 121 78.5
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 2.3e-42 175.6 106 86.8
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.3e-42 175.6 118 78.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.9e-42 174.9 123 78.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.9e-42 174.9 123 78.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 5.1e-42 174.5 107 91.6
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 6.7e-42 174.1 123 72.4
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 6.7e-42 174.1 123 74.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 6.7e-42 174.1 123 77.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 8.7e-42 173.7 114 79.8
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 120 78.3
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.9e-41 172.6 122 78.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.5e-41 172.2 121 78.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.5e-41 172.2 123 75.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.3e-41 171.8 121 76.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 4.3e-41 171.4 110 80.9
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.6e-40 169.5 121 78.5
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.6e-40 169.5 123 74.8
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-40 169.5 123 74.8
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 78.5
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 78.5
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-40 168.7 121 76.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.8e-40 168.7 112 75.9
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.8e-40 167.9 114 76.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.1e-40 167.2 123 73.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.4e-39 166.4 128 73.4
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.3e-39 164.5 116 76.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.3e-39 164.5 116 76.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 9.0e-39 163.7 123 73.2
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.0e-38 162.5 123 73.2
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.4e-38 161.8 111 74.8
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 3.4e-38 161.8 111 76.6
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.4e-38 161.8 101 82.2
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.4e-38 161.8 123 73.2
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.5e-38 161.4 115 76.5
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 83.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 123 69.9
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.3e-37 159.8 115 72.2
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.7e-37 159.5 100 82.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 3.8e-37 158.3 123 71.5
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.1e-36 156.8 108 76.9
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.4e-36 156.4 122 68.9
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.9e-36 156.0 121 67.8
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.5e-36 154.5 104 73.1
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 7.1e-36 154.1 106 78.3
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 7.1e-36 154.1 105 73.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 9.3e-36 153.7 114 70.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 9.3e-36 153.7 114 70.2
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 9.3e-36 153.7 114 70.2
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 100 76.0
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.6e-35 152.9 104 75.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.7e-35 152.1 121 68.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.7e-35 152.1 110 71.8
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.7e-35 152.1 110 71.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.6e-35 151.4 125 67.2
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 7.9e-35 150.6 103 74.8
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.3e-34 149.8 103 72.8
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.3e-34 149.8 119 67.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.3e-34 149.8 120 69.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.8e-34 149.4 115 66.1
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.1e-34 147.9 114 68.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.7e-34 147.5 124 67.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.7e-34 147.1 111 69.4
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 8.7e-34 147.1 113 66.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-33 146.4 92 91.3
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-33 146.4 92 91.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.9e-33 146.0 114 71.1
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.9e-33 146.0 110 70.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.5e-33 145.6 109 66.1
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 9.6e-33 143.7 98 72.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.8e-32 142.1 111 66.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 4.8e-32 141.4 121 62.8
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.1e-31 140.2 96 75.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.4e-31 139.0 95 77.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-30 136.7 85 81.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.5e-30 136.3 106 70.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.2e-28 128.3 103 66.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.9e-27 124.0 89 75.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.3e-26 122.5 112 56.2
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.1e-25 120.2 107 61.7
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.4e-25 117.5 88 69.3
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.4e-20 103.2 67 80.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.6e-19 99.8 100 53.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-19 98.6 69 73.9
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.6e-19 98.2 57 89.5
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.6e-19 98.2 102 55.9
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.0e-18 97.1 68 70.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.8e-18 96.3 64 68.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-17 93.2 70 68.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.3e-16 90.1 115 54.8
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-15 86.7 74 63.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.3e-15 84.7 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.6e-14 82.4 90 55.6
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-14 81.6 73 61.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 5.9e-14 81.3 85 56.5
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.5e-13 77.4 68 61.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.2e-12 75.5 103 44.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 4.7e-11 71.6 115 40.9
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 7.9e-11 70.9 49 73.5
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-09 65.5 82 50.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.4e-09 65.1 56 60.7
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.3e-08 63.5 62 53.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.2e-08 62.8 35 88.6
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 3.7e-08 62.0 52 61.5
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 4.8e-08 61.6 122 33.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.1e-07 60.5 47 63.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.8e-07 59.7 59 50.8
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 5.9e-06 54.7 67 49.3


User provided reference genes

Program Settings