Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12369 Brassica carinata HOM05D014316 ORTHO05D017672 6.2e-70 267.3 132 100.0
BolC9t60111H Brassica oleracea HOM05D014316 ORTHO05D017672 6.9e-29 131.0 80 87.5
A09p01580 Brassica napus HOM05D014316 ORTHO05D017672 3.4e-28 128.6 80 83.8
BolC5t34195H Brassica oleracea HOM05D014316 ORTHO05D017672 1.0e-27 127.1 80 85.0
BolC1t05492H Brassica oleracea HOM05D014316 ORTHO05D017672 5.0e-27 124.8 80 83.8
C04p04670 Brassica napus HOM05D014316 ORTHO05D017672 2.7e-25 119.0 60 95.0
BolC4t22133H Brassica oleracea HOM05D014316 ORTHO05D017672 1.4e-24 116.7 80 80.0
BolC5t34682H Brassica oleracea HOM05D014316 ORTHO05D017672 3.1e-21 105.5 66 84.8
BraA09t35816Z Brassica rapa HOM05D014316 ORTHO05D017672 2.6e-15 85.9 59 79.7
BcaB02g07934 Brassica carinata HOM05D001349 ORTHO05D001980 1.7e-14 83.2 115 49.6
AL7G49160 Arabidopsis lyrata HOM05D001349 ORTHO05D001980 2.2e-14 82.8 113 51.3
A07p20400 Brassica napus HOM05D001349 ORTHO05D001980 2.8e-14 82.4 115 49.6
BraA07t29737Z Brassica rapa HOM05D001349 ORTHO05D001980 2.8e-14 82.4 115 49.6
Sp7g01230 Schrenkiella parvula HOM05D001349 ORTHO05D001980 2.8e-14 82.4 100 51.0
AT5G40640 Arabidopsis thaliana HOM05D001349 ORTHO05D001980 4.8e-14 81.6 98 53.1
Thhalv10027698m.g Eutrema salsugineum HOM05D001349 ORTHO05D001980 4.8e-14 81.6 100 51.0
Aa31LG2G5430 Aethionema arabicum HOM05D001349 ORTHO05D001980 1.1e-13 80.5 113 48.7
BcaC08g44475 Brassica carinata HOM05D001349 ORTHO05D001980 1.1e-13 80.5 100 50.0
C04p47470 Brassica napus HOM05D001349 ORTHO05D001980 1.1e-13 80.5 98 53.1
BolC4t26348H Brassica oleracea HOM05D001349 ORTHO05D001980 1.1e-13 80.5 98 53.1
CARHR261320 Cardamine hirsuta HOM05D001349 ORTHO05D001980 1.1e-13 80.5 99 52.5
BcaC06g33822 Brassica carinata HOM05D001349 ORTHO05D001980 2.4e-13 79.3 98 48.0
BolC7t44164H Brassica oleracea HOM05D001349 ORTHO05D001980 2.4e-13 79.3 98 48.0
BcaB06g27540 Brassica carinata HOM05D001349 ORTHO05D001980 3.1e-13 79.0 98 52.0
C07p36460 Brassica napus HOM05D001349 ORTHO05D001980 3.1e-13 79.0 113 46.0
Carub.0007s3485 Capsella rubella HOM05D001349 ORTHO05D001980 3.1e-13 79.0 98 52.0
CARHR148730 Cardamine hirsuta HOM05D001349 ORTHO05D001980 3.1e-13 79.0 98 48.0
Sp2g16580 Schrenkiella parvula HOM05D001349 ORTHO05D001980 4.1e-13 78.6 98 45.9
Thhalv10004240m.g Eutrema salsugineum HOM05D001349 ORTHO05D001980 5.3e-13 78.2 98 46.9
A06p41210 Brassica napus HOM05D001349 ORTHO05D001980 7.0e-13 77.8 98 48.0
BraA06t27044Z Brassica rapa HOM05D001349 ORTHO05D001980 7.0e-13 77.8 98 48.0
BcaNung05654 Brassica carinata HOM05D001349 ORTHO05D001980 9.1e-13 77.4 113 46.0
AT3G27390 Arabidopsis thaliana HOM05D001349 ORTHO05D001980 1.2e-12 77.0 100 48.0
A04p13680 Brassica napus HOM05D001349 ORTHO05D001980 1.6e-12 76.6 98 51.0
BolC6t37123H Brassica oleracea HOM05D001349 ORTHO05D001980 1.6e-12 76.6 111 46.8
BraA04t17028Z Brassica rapa HOM05D001349 ORTHO05D001980 1.6e-12 76.6 98 51.0
Aa31LG9G980 Aethionema arabicum HOM05D001349 ORTHO05D001980 2.6e-12 75.9 98 49.0
C06p19280 Brassica napus HOM05D001349 ORTHO05D001980 2.6e-12 75.9 96 47.9
Carub.0005s0570 Capsella rubella HOM05D001349 ORTHO05D001980 2.6e-12 75.9 98 48.0
BcaB07g30162 Brassica carinata HOM05D001349 ORTHO05D001980 3.5e-12 75.5 98 44.9
A02p35430 Brassica napus HOM05D001349 ORTHO05D001980 3.5e-12 75.5 98 44.9
C02p54140 Brassica napus HOM05D001349 ORTHO05D001980 3.5e-12 75.5 98 44.9
BolC2t11477H Brassica oleracea HOM05D001349 ORTHO05D001980 3.5e-12 75.5 98 44.9
BraA02t08544Z Brassica rapa HOM05D001349 ORTHO05D001980 3.5e-12 75.5 98 44.9
AL5G16720 Arabidopsis lyrata HOM05D001349 ORTHO05D001980 5.9e-12 74.7 98 46.9
BcaC03g17458 Brassica carinata HOM05D001349 ORTHO05D001980 1.0e-11 73.9 98 43.9
THA.LOC104825310 Tarenaya hassleriana HOM05D001349 ORTHO05D001980 2.9e-11 72.4 100 46.0
Manes.17G108700 Manihot esculenta HOM05D001349 ORTHO05D001980 2.5e-10 69.3 116 38.8
Manes.15G154600 Manihot esculenta HOM05D001349 ORTHO05D001980 4.2e-10 68.6 115 40.0
Ciclev10014727m.g Citrus clementina HOM05D001349 ORTHO05D001980 2.7e-09 65.9 100 41.0
Prupe.3G297000 Prunus persica HOM05D001349 ORTHO05D001980 2.7e-09 65.9 115 38.3
Prupe.3G297600 Prunus persica HOM05D001349 ORTHO05D001980 2.7e-09 65.9 115 38.3
Gohir.D04G080500 Gossypium hirsutum HOM05D001349 ORTHO05D001980 6.1e-09 64.7 100 41.0
Gorai.012G091500 Gossypium raimondii HOM05D001349 ORTHO05D001980 6.1e-09 64.7 100 41.0
Gohir.A05G342600 Gossypium hirsutum HOM05D001349 ORTHO05D001980 1.0e-08 63.9 100 42.0
Sabra16G0219500 Salix brachista HOM05D001349 ORTHO05D001980 1.4e-08 63.5 100 39.0
CiPaw.04G031900 Carya illinoinensis HOM05D001349 ORTHO05D001980 4.0e-08 62.0 104 38.5
TWI36G1760 Tripterygium wilfordii HOM05D001349 ORTHO05D001980 6.7e-08 61.2 98 38.8
Actinidia05955 Actinidia chinensis HOM05D001349 ORTHO05D001980 1.2e-07 60.5 80 48.8
Lalb_Chr24g0403441 Lupinus albus HOM05D001349 ORTHO05D001980 1.2e-07 60.5 134 35.8
MD09G1019400 Malus domestica HOM05D001349 ORTHO05D001980 1.2e-07 60.5 117 35.0
Potri.001G338900 Populus trichocarpa HOM05D001349 ORTHO05D001980 1.2e-07 60.5 103 37.9
PGR142G3710 Punica granatum HOM05D001349 ORTHO05D001980 1.2e-07 60.5 103 35.9
Duzib147G1419 Durio zibethinus HOM05D001349 ORTHO05D001980 1.5e-07 60.1 100 39.0
arahy.Tifrunner.gnm1.ann1.2FUK2Z Arachis hypogaea HOM05D001349 ORTHO05D001980 2.0e-07 59.7 96 39.6
arahy.Tifrunner.gnm1.ann1.U2QVME Arachis hypogaea HOM05D001349 ORTHO05D001980 2.0e-07 59.7 79 43.0
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 2.0e-07 59.7 114 39.5
Lalb_Chr14g0362961 Lupinus albus HOM05D001349 ORTHO05D001980 2.6e-07 59.3 113 38.1
Medtr7g031900 Medicago truncatula HOM05D001349 ORTHO05D001980 2.6e-07 59.3 115 37.4
Phvul.008G145500 Phaseolus vulgaris HOM05D001349 ORTHO05D001980 2.6e-07 59.3 115 37.4
Sed0000877 Sechium edule HOM05D001349 ORTHO05D001980 2.6e-07 59.3 82 39.0
Atru.chr6.2467 Acer truncatum HOM05D001349 ORTHO05D001980 3.3e-07 58.9 100 40.0
Sed0005133 Sechium edule HOM05D001349 ORTHO05D001980 3.3e-07 58.9 79 45.6
CsaV3_3G027500 Cucumis sativus L. HOM05D001349 ORTHO05D001980 4.4e-07 58.5 115 39.1
Psat1g083080 Pisum sativum HOM05D001349 ORTHO05D001980 4.4e-07 58.5 115 36.5
Actinidia36148 Actinidia chinensis HOM05D001349 ORTHO05D001980 5.7e-07 58.2 114 39.5
Glyma.16G066400 Glycine max HOM05D001349 ORTHO05D001980 5.7e-07 58.2 115 36.5
CSS0009153 Camellia sinensis var. sinensis HOM05D001349 ORTHO05D001980 7.5e-07 57.8 101 39.6
CSS0009816 Camellia sinensis var. sinensis HOM05D001349 ORTHO05D001980 7.5e-07 57.8 101 39.6
Lj7A604T61 Lonicera japonica HOM05D001349 ORTHO05D001980 7.5e-07 57.8 101 39.6
Thecc.04G024600 Theobroma cacao HOM05D001349 ORTHO05D001980 7.5e-07 57.8 100 39.0
CsaV3_5G026840 Cucumis sativus L. HOM05D001349 ORTHO05D001980 9.7e-07 57.4 117 40.2
SGA_v2.0_scaffold47G17533 Striga asiatica HOM05D001349 ORTHO05D001980 9.7e-07 57.4 114 40.4
ClCG09G019540 Citrullus lanatus HOM05D001349 ORTHO05D001980 1.3e-06 57.0 117 41.9
MELO3C014825.2 Cucumis melo HOM05D001349 ORTHO05D001980 1.3e-06 57.0 81 44.4
MD17G1020000 Malus domestica HOM05D001349 ORTHO05D001980 1.3e-06 57.0 116 34.5
CANSAT64G0063 Cannabis sativa HOM05D001349 ORTHO05D001980 2.2e-06 56.2 116 32.8
Cc07_g00240 Coffea canephora HOM05D001349 ORTHO05D001980 2.2e-06 56.2 116 36.2
Peaxi162Scf00700g00236 Petunia axillaris HOM05D001349 ORTHO05D001980 2.2e-06 56.2 116 34.5
Ca_03832_v3 Cicer arietinum L. HOM05D001349 ORTHO05D001980 2.8e-06 55.8 115 36.5
Duzib264G0365 Durio zibethinus HOM05D001349 ORTHO05D001980 2.8e-06 55.8 91 39.6
Migut.K01426 Erythranthe guttata HOM05D001349 ORTHO05D001980 2.8e-06 55.8 114 37.7
HanXRQChr14g0451441 Helianthus annuus HOM05D001349 ORTHO05D001980 2.8e-06 55.8 115 38.3
Cfa007301 Carpinus fangiana HOM05D001349 ORTHO05D001980 3.7e-06 55.5 106 35.8
RcHm_v2.0_Chr2g0173781 Rosa chinensis HOM05D001349 ORTHO05D001980 3.7e-06 55.5 102 35.3
FvH4_6g52230 Fragaria vesca HOM05D001349 ORTHO05D001980 4.8e-06 55.1 108 32.4
Lalb_Chr02g0158021 Lupinus albus HOM05D001349 ORTHO05D001980 4.8e-06 55.1 115 36.5
Psat3g169480 Pisum sativum HOM05D001349 ORTHO05D001980 4.8e-06 55.1 115 36.5
CiPaw.03G048500 Carya illinoinensis HOM05D001349 ORTHO05D001980 6.3e-06 54.7 79 43.0
Medtr6g022160 Medicago truncatula HOM05D001349 ORTHO05D001980 6.3e-06 54.7 98 37.8
SalBow7G0906 Salvia bowleyana HOM05D001349 ORTHO05D001980 6.3e-06 54.7 79 43.0
TPR.G1070 Trifolium pratense HOM05D001349 ORTHO05D001980 6.3e-06 54.7 115 36.5
MSTRG.3275 Avicennia marina HOM05D001349 ORTHO05D001980 8.2e-06 54.3 63 49.2
Ca_04395_v3 Cicer arietinum L. HOM05D001349 ORTHO05D001980 8.2e-06 54.3 98 37.8
Nn4g22492 Nelumbo nucifera HOM05D001349 ORTHO05D001980 8.2e-06 54.3 118 37.3


User provided reference genes

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