Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.9e-153 545.8 284 100.0
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 3.7e-152 541.6 284 99.3
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 6.7e-146 520.8 285 96.8
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 2.5e-145 518.8 287 96.2
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 3.3e-145 518.5 288 96.5
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 5.7e-129 464.5 292 86.0
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 5.2e-122 441.4 289 84.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 5.2e-122 441.4 289 84.8
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 7.5e-121 437.6 297 82.2
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-120 436.8 289 83.4
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.1e-119 433.7 279 85.7
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 2.4e-119 432.6 288 84.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 5.9e-118 427.9 290 82.1
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 5.0e-117 424.9 296 81.8
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.5e-116 422.5 293 81.9
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 3.0e-114 415.6 296 77.0
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.3e-112 410.2 296 76.7
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.8e-111 406.4 287 79.4
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.8e-111 406.4 262 84.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.0e-106 390.6 295 73.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 4.0e-106 388.7 220 90.0
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.1e-103 379.0 297 73.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.9e-101 372.5 298 71.5
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 9.5e-100 367.5 286 73.1
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 8.0e-99 364.4 286 71.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 4.0e-98 362.1 291 72.5
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 6.8e-98 361.3 284 70.8
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.5e-97 360.1 284 70.8
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.4e-95 352.8 284 71.8
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 4.1e-95 352.1 208 87.0
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.7e-94 349.4 292 69.2
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 4.6e-94 348.6 299 67.9
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.7e-93 346.7 290 67.6
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.7e-93 346.7 289 68.5
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.7e-93 346.7 289 68.5
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.7e-93 346.7 193 90.2
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.3e-93 346.3 284 68.7
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 3.0e-93 345.9 284 70.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 3.0e-93 345.9 254 74.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 5.0e-93 345.1 258 72.9
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 6.6e-93 344.7 289 68.5
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 1.1e-92 344.0 217 82.5
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.5e-92 343.6 248 74.6
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.5e-92 343.6 287 70.7
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.5e-92 343.6 286 67.1
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.9e-92 343.2 196 88.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.9e-92 343.2 196 88.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.5e-92 342.8 214 82.2
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 3.3e-92 342.4 284 69.7
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 3.3e-92 342.4 230 77.8
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.3e-92 342.0 296 67.9
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 5.6e-92 341.7 308 66.2
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 5.6e-92 341.7 290 69.0
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 5.6e-92 341.7 193 89.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 7.3e-92 341.3 284 68.7
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 7.3e-92 341.3 293 68.9
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 7.3e-92 341.3 276 69.2
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 7.3e-92 341.3 273 70.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.2e-91 340.5 216 81.5
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.6e-91 340.1 208 84.6
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.6e-91 340.1 300 66.3
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.8e-91 339.3 216 81.0
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.8e-91 339.3 289 68.2
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 3.6e-91 339.0 208 84.1
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.6e-91 339.0 284 68.7
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.7e-91 338.6 195 89.2
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.7e-91 338.6 255 73.3
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 4.7e-91 338.6 215 81.4
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 4.7e-91 338.6 282 69.5
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 4.7e-91 338.6 282 69.5
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.7e-91 338.6 291 67.0
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.2e-91 338.2 214 82.2
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 6.2e-91 338.2 203 84.7
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 8.0e-91 337.8 193 89.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 8.0e-91 337.8 197 86.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 2.3e-90 336.3 285 68.8
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 3.1e-90 335.9 272 71.0
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.1e-90 335.9 267 70.0
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 5.2e-90 335.1 192 89.1
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 6.8e-90 334.7 216 81.5
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 8.9e-90 334.3 276 68.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.5e-89 333.6 185 88.6
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 3.4e-89 332.4 283 68.6
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 4.4e-89 332.0 209 81.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.4e-89 332.0 273 68.5
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.2e-88 329.7 250 73.6
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.7e-88 328.9 280 67.5
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.7e-88 328.9 286 65.7
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 6.4e-88 328.2 262 70.2
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.4e-87 327.0 209 82.3
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.9e-87 326.6 263 67.7
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.4e-87 326.2 301 64.8
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.4e-87 326.2 276 65.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 5.4e-87 325.1 284 65.5
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.4e-87 325.1 190 84.7
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 7.0e-87 324.7 265 70.2
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 9.2e-87 324.3 257 70.0
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.7e-86 322.8 274 67.2
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 6.0e-86 321.6 209 78.5
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 6.0e-86 321.6 214 78.0
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-85 320.5 284 64.4
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.7e-85 320.1 286 63.3
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 3.0e-85 319.3 281 64.1
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 3.9e-85 318.9 222 77.9
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 5.0e-85 318.5 278 65.1
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 2.8e-83 312.8 187 84.5
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.2e-82 308.5 184 82.1
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.9e-80 302.0 257 65.8
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.2e-79 299.3 265 64.5
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.5e-76 290.4 155 94.2
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.9e-76 290.0 293 62.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 7.3e-76 288.1 231 70.6
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 6.2e-75 285.0 264 63.3
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 4.0e-74 282.3 157 89.2
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.6e-67 260.4 200 70.5
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.1e-67 260.0 258 61.2
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.1e-67 260.0 239 64.0
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 8.9e-66 254.6 245 63.3
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 7.6e-65 251.5 134 94.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.6e-65 251.5 160 76.2
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.3e-64 250.8 148 85.1
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.4e-63 245.4 244 61.5
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.3e-61 240.7 193 63.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 5.6e-60 235.3 191 70.7
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 7.3e-60 235.0 160 70.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.2e-57 227.6 190 64.7
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 2.3e-53 213.4 121 88.4
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.4e-47 194.1 161 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 3.5e-46 189.5 120 77.5
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-39 167.2 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.7e-38 163.3 89 89.9
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.8e-32 142.9 160 49.4
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.5e-31 140.2 187 48.7
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.3e-28 129.8 177 50.3
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.7e-24 117.5 78 71.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.8e-24 116.3 170 50.0
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.2e-23 112.8 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 1.5e-17 94.4 130 43.1
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 7.7e-17 92.0 78 65.4
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.1e-07 61.6 59 52.5


User provided reference genes

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