Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 5.2e-201 704.1 344 100.0
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 5.2e-201 704.1 344 100.0
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 5.9e-197 690.6 368 93.5
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 1.9e-187 659.1 346 94.2
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 2.0e-184 649.0 346 93.9
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 8.6e-180 633.6 340 91.5
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 1.2e-165 586.6 345 82.9
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 1.2e-165 586.6 345 83.5
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 6.0e-165 584.3 344 82.0
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 1.0e-164 583.6 344 83.7
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 2.2e-159 565.8 375 74.4
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 3.5e-149 531.9 344 73.0
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 2.8e-146 522.3 361 71.2
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 4.6e-125 451.8 351 61.8
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.1e-121 440.7 348 60.3
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 1.2e-120 437.2 348 60.1
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 2.0e-120 436.4 348 60.9
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 4.5e-120 435.3 348 59.8
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 1.9e-118 429.9 344 59.9
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 9.3e-118 427.6 348 58.6
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 3.5e-117 425.6 344 58.4
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 8.7e-116 421.0 344 57.3
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 1.6e-114 416.8 342 57.0
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 1.2e-112 410.6 348 58.0
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 2.9e-111 406.0 346 55.8
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 1.1e-110 404.1 348 57.8
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 1.4e-110 403.7 332 58.4
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 2.5e-110 402.9 348 56.6
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 2.5e-110 402.9 348 55.5
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 4.2e-110 402.1 346 54.6
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 5.5e-110 401.7 342 58.2
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 3.6e-109 399.1 346 55.5
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 3.6e-109 399.1 346 54.6
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 3.6e-109 399.1 346 54.3
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 6.1e-109 398.3 346 54.9
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 7.9e-109 397.9 339 55.2
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 1.0e-108 397.5 348 54.9
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 2.3e-108 396.4 345 55.1
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 5.1e-108 395.2 346 53.5
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 8.8e-108 394.4 339 55.2
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.3e-107 392.1 346 54.9
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 4.3e-107 392.1 346 54.6
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 2.2e-106 389.8 362 52.5
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 3.7e-106 389.0 348 53.4
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 4.8e-106 388.7 348 54.3
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 4.8e-106 388.7 352 54.3
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 8.2e-106 387.9 351 52.7
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 1.1e-105 387.5 346 53.8
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 1.1e-105 387.5 348 54.3
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 1.4e-105 387.1 340 55.0
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 1.4e-105 387.1 351 54.7
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 1.8e-105 386.7 326 54.6
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 3.1e-105 386.0 348 53.4
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 3.1e-105 386.0 349 52.7
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 4.1e-105 385.6 349 55.0
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 1.5e-104 383.6 348 53.2
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 1.5e-104 383.6 345 53.3
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 2.0e-104 383.3 346 53.5
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 2.0e-104 383.3 340 54.7
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 2.6e-104 382.9 364 52.2
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 2.6e-104 382.9 345 54.5
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 2.6e-104 382.9 346 53.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.5e-104 382.1 342 53.2
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.5e-104 382.1 342 53.2
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 1.0e-103 380.9 348 54.0
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 1.3e-103 380.6 322 54.0
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 2.9e-103 379.4 328 53.7
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 6.5e-103 378.3 360 51.9
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 8.5e-103 377.9 349 54.2
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 1.1e-102 377.5 348 51.4
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 1.1e-102 377.5 313 57.5
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 8.8e-100 367.9 349 51.9
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 2.0e-99 366.7 322 53.1
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 2.0e-99 366.7 327 52.6
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 4.4e-99 365.5 320 58.4
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 2.8e-98 362.8 194 82.0
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 2.8e-98 362.8 344 51.2
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.4e-97 360.5 361 50.1
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 2.4e-97 359.8 349 50.4
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 7.0e-97 358.2 354 50.6
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 1.0e-95 354.4 263 61.2
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 1.7e-95 353.6 329 51.1
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 4.2e-94 349.0 346 50.6
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 4.2e-94 349.0 343 49.0
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 1.2e-93 347.4 342 49.4
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 2.7e-93 346.3 317 55.5
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.1e-91 340.9 334 50.9
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 7.5e-91 338.2 274 61.3
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 5.3e-89 332.0 344 48.3
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 7.7e-88 328.2 339 48.4
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 9.4e-86 321.2 264 60.2
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 2.1e-85 320.1 315 51.4
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 8.0e-85 318.2 251 61.8
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 6.8e-84 315.1 345 49.3
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 4.4e-83 312.4 350 47.1
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.0e-80 303.5 241 60.6
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 2.7e-77 293.1 261 54.0
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 2.6e-75 286.6 342 45.3
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 1.3e-74 284.3 304 51.0
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.8e-73 280.4 249 55.0
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 4.3e-70 269.2 234 51.3
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 9.5e-70 268.1 261 51.3
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 7.3e-62 241.9 200 57.0
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 2.1e-61 240.4 357 37.5
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 3.9e-55 219.5 217 51.6
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 1.1e-54 218.0 316 39.9
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 1.4e-49 201.1 245 44.9
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 1.3e-42 177.9 126 61.9
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 1.1e-41 174.9 128 57.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 1.2e-32 144.8 300 33.3
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 1.1e-28 131.7 100 58.0
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 3.4e-27 126.7 181 40.9
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 1.3e-26 124.8 144 43.1
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 2.0e-19 100.9 71 59.2
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 3.3e-14 83.6 70 58.6
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 8.1e-13 79.0 84 54.8


User provided reference genes

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