Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 7.5e-92 340.5 171 100.0
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 7.5e-92 340.5 171 100.0
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.7e-91 339.3 171 99.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 5.3e-90 334.3 171 97.1
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.9e-89 330.9 171 96.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.0e-88 330.1 171 95.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.5e-87 325.5 171 94.2
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.5e-87 324.3 171 94.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.7e-86 322.0 171 94.2
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.3e-85 318.9 171 92.4
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.3e-85 318.9 171 92.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 5.2e-85 317.8 171 91.8
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.5e-84 313.9 171 90.6
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 8.6e-80 300.4 171 86.5
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 8.6e-80 300.4 171 86.5
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.2e-78 296.6 171 87.1
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.8e-78 295.4 171 83.6
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-77 292.7 164 87.8
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 3.0e-77 292.0 164 87.8
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 3.0e-77 292.0 164 87.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 8.9e-77 290.4 169 84.0
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.2e-76 290.0 171 83.6
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.6e-76 288.9 171 83.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 7.0e-74 280.8 172 83.1
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 6.1e-70 267.7 171 74.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.0e-69 266.9 173 76.9
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.4e-69 266.5 172 76.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.3e-69 265.8 174 76.4
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.2e-69 264.6 173 73.4
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 6.8e-69 264.2 171 73.7
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.8e-69 264.2 165 78.2
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 8.9e-69 263.8 172 74.4
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.2e-68 263.5 171 74.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.5e-68 263.1 181 72.9
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.4e-68 261.5 173 71.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 7.5e-68 260.8 178 74.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 9.8e-68 260.4 169 71.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.3e-67 260.0 174 74.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 6.4e-67 257.7 174 72.4
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 6.4e-67 257.7 162 79.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 8.3e-67 257.3 181 70.7
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 8.3e-67 257.3 174 72.4
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-66 256.9 172 73.8
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 71.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 72.4
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 175 72.6
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.1e-66 255.0 172 72.1
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.1e-66 255.0 175 72.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 5.4e-66 254.6 175 72.6
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 5.4e-66 254.6 173 71.1
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 7.0e-66 254.2 173 72.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.7e-65 252.3 160 76.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.7e-65 252.3 175 70.3
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 71.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 3.5e-65 251.9 172 70.3
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.5e-65 251.9 202 66.8
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 71.8
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 175 70.9
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 6.0e-65 251.1 171 71.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 6.0e-65 251.1 167 72.5
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 7.8e-65 250.8 174 69.5
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.8e-65 250.8 173 71.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 7.8e-65 250.8 169 71.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-64 250.4 202 66.3
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-64 250.4 202 66.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 71.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 71.9
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 163 74.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.3e-64 249.2 170 71.2
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.3e-64 249.2 163 74.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 3.9e-64 248.4 168 71.4
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.9e-64 248.4 165 73.3
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.0e-64 248.1 173 71.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 5.0e-64 248.1 164 73.2
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.0e-64 248.1 168 71.4
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 6.6e-64 247.7 183 68.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.6e-64 247.7 161 72.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 8.6e-64 247.3 178 69.7
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 71.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.5e-63 246.5 170 71.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.5e-63 246.5 173 70.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.3e-63 245.4 159 74.8
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 159 74.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.3e-63 245.0 173 69.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.3e-63 245.0 173 69.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.3e-63 245.0 173 69.9
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 7.3e-63 244.2 163 73.6
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.2e-62 243.4 172 71.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.2e-62 243.4 173 70.5
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.2e-62 243.4 159 74.8
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.2e-62 243.4 196 64.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.1e-62 242.7 159 74.2
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 8.0e-62 240.7 168 67.9
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.8e-61 239.6 157 72.6
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.3e-61 239.2 159 73.0
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.0e-61 238.4 173 69.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.4e-60 235.3 208 59.1
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 4.4e-60 235.0 168 68.5
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.5e-60 234.2 159 74.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.7e-59 233.0 173 64.2
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.9e-59 231.5 176 67.0
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 8.3e-59 230.7 173 64.2
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.5e-57 225.3 166 64.5
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.3e-56 222.6 225 52.4
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.9e-56 221.9 139 77.7
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.9e-56 221.9 211 59.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.6e-56 221.1 171 63.2
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 6.6e-56 221.1 166 63.3
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.5e-55 219.9 189 64.0
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.6e-54 216.5 219 54.8
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.4e-53 213.4 142 70.4
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.2e-52 210.3 255 47.8
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.4e-50 203.4 164 65.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.1e-48 194.9 170 61.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.2e-46 188.0 168 56.0
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.1e-45 187.2 120 75.0
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 9.9e-44 180.6 113 73.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.8e-43 178.7 173 59.5
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 6.2e-38 161.4 116 73.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.1e-37 160.6 107 72.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.0e-36 156.4 113 62.8
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 9.9e-36 154.1 119 68.1
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.9e-35 152.5 116 61.2
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 6.4e-35 151.4 107 68.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 8.4e-35 151.0 101 71.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.1e-34 147.9 139 47.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.7e-33 146.0 96 70.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 3.5e-33 145.6 143 46.9
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 6.0e-33 144.8 74 97.3
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 6.0e-33 144.8 74 97.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.1e-29 134.0 74 89.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.5e-28 130.2 89 69.7
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.8e-28 128.3 111 55.9
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.2e-27 126.3 103 64.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 4.2e-26 122.1 65 93.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.4e-21 106.3 111 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 9.0e-21 104.4 112 38.4
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 9.0e-21 104.4 63 79.4
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.5e-20 103.6 64 76.6
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 3.4e-20 102.4 104 43.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.0e-19 100.9 101 40.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.0e-19 100.9 93 57.0
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-18 97.1 61 72.1
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.0e-16 90.9 65 64.6
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.8e-16 90.1 95 46.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 4.3e-15 85.5 106 37.7
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.8e-14 82.0 50 72.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.8e-13 80.1 136 34.6
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.9e-11 72.8 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 8.2e-06 54.7 28 89.3


User provided reference genes

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