Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12286 Brassica carinata HOM05D001286 ORTHO05D000440 2.6e-54 214.9 95 100.0
BcaB02g08841 Brassica carinata HOM05D001286 ORTHO05D000440 5.1e-50 200.7 90 97.8
C04p05620 Brassica napus HOM05D001286 ORTHO05D000440 4.8e-32 141.0 60 100.0
BolC4t22191H Brassica oleracea HOM05D001286 ORTHO05D000440 4.8e-32 141.0 60 100.0
BcaB02g08844 Brassica carinata HOM05D001286 ORTHO05D000440 1.1e-31 139.8 80 78.8
C07p03210 Brassica napus HOM05D001286 ORTHO05D000440 4.1e-23 111.3 91 60.4
BolC7t40718H Brassica oleracea HOM05D001286 ORTHO05D000440 4.1e-23 111.3 91 60.4
A07p01550 Brassica napus HOM05D001286 ORTHO05D000440 5.3e-23 110.9 91 58.2
AL4G43800 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 7.7e-22 107.1 81 61.7
Sp3g32590 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.5e-20 102.1 75 60.0
BraA07t29366Z Brassica rapa HOM05D001286 ORTHO05D000440 4.2e-20 101.3 73 63.0
A07p16390 Brassica napus HOM05D001286 ORTHO05D000440 9.4e-20 100.1 73 63.0
BcaB03g14398 Brassica carinata HOM05D001286 ORTHO05D000440 1.4e-18 96.3 70 62.9
C07p24090 Brassica napus HOM05D001286 ORTHO05D000440 1.4e-18 96.3 70 62.9
BolC7t42933H Brassica oleracea HOM05D001286 ORTHO05D000440 1.4e-18 96.3 70 62.9
AT3G18720 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 1.5e-17 92.8 64 68.8
Carub.0004s2747 Capsella rubella HOM05D001286 ORTHO05D000440 2.0e-17 92.4 77 57.1
AT2G44735 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 5.7e-17 90.9 73 60.3
CARHR139790 Cardamine hirsuta HOM05D001286 ORTHO05D000440 6.3e-16 87.4 75 58.7
BcaB03g16712 Brassica carinata HOM05D001286 ORTHO05D000440 7.0e-15 84.0 71 60.6
BcaB01g03228 Brassica carinata HOM05D001286 ORTHO05D000440 3.5e-14 81.6 67 56.7
BcaC03g14450 Brassica carinata HOM05D001286 ORTHO05D000440 1.0e-13 80.1 68 57.4
C02p18620 Brassica napus HOM05D001286 ORTHO05D000440 1.0e-13 80.1 68 57.4
BolC2t08007H Brassica oleracea HOM05D001286 ORTHO05D000440 1.0e-13 80.1 68 57.4
BolC2t09692H Brassica oleracea HOM05D001286 ORTHO05D000440 1.0e-13 80.1 68 57.4
A02p11260 Brassica napus HOM05D001286 ORTHO05D000440 1.3e-13 79.7 68 57.4
BraA02t06188Z Brassica rapa HOM05D001286 ORTHO05D000440 1.3e-13 79.7 68 57.4
AL3G32070 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 3.8e-13 78.2 64 59.4
BcaB05g22018 Brassica carinata HOM05D001286 ORTHO05D000440 3.2e-12 75.1 68 54.4
CARHR094100 Cardamine hirsuta HOM05D001286 ORTHO05D000440 3.2e-12 75.1 61 59.0
C07p05950 Brassica napus HOM05D001286 ORTHO05D024426 4.2e-12 74.7 82 48.8
BolC7t41003H Brassica oleracea HOM05D001286 ORTHO05D024426 4.2e-12 74.7 82 48.8
CARHR094110 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.0e-10 70.1 62 54.8
Carub.0003s1850 Capsella rubella HOM05D001286 ORTHO05D000440 4.0e-10 68.2 63 49.2
Sp3g32580 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.2e-09 66.6 68 48.5
CARHR036030 Cardamine hirsuta HOM05D001286 ORTHO05D000440 2.0e-09 65.9 91 41.8
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 4.4e-09 64.7 89 42.7
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 5.7e-09 64.3 72 45.8
BcaB02g08843 Brassica carinata HOM05D001286 ORTHO05D000440 9.8e-09 63.5 35 71.4
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 3.7e-08 61.6 87 36.8
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 4.9e-08 61.2 72 44.4
Oeu047860.1 Olea europaea HOM05D001286 ORTHO05D000440 4.9e-08 61.2 64 43.8
Cpa.g.sc5.10 Carica papaya HOM05D001286 ORTHO05D000440 6.3e-08 60.8 88 39.8
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 6.3e-08 60.8 71 43.7
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 1.1e-07 60.1 71 43.7
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 1.4e-07 59.7 72 43.1
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 1.4e-07 59.7 72 43.1
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.4e-07 59.7 72 43.1
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.4e-07 59.7 71 43.7
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 1.4e-07 59.7 72 43.1
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.4e-07 59.7 72 43.1
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 1.8e-07 59.3 69 40.6
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 1.8e-07 59.3 67 44.8
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 1.8e-07 59.3 97 37.1
Glyma.03G196600 Glycine max HOM05D001286 ORTHO05D000440 2.4e-07 58.9 71 42.3
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 2.4e-07 58.9 72 43.1
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 2.4e-07 58.9 71 40.8
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 3.1e-07 58.5 87 34.5
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 3.1e-07 58.5 71 40.8
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 4.1e-07 58.2 71 39.4
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 4.1e-07 58.2 72 43.1
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 4.1e-07 58.2 71 40.8
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 4.1e-07 58.2 71 40.8
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 7.0e-07 57.4 71 40.8
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 7.0e-07 57.4 70 41.4
C07p03220 Brassica napus HOM05D001286 ORTHO05D000440 9.2e-07 57.0 41 63.4
BolC7t40719H Brassica oleracea HOM05D001286 ORTHO05D000440 9.2e-07 57.0 41 63.4
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 9.2e-07 57.0 71 40.8
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 9.2e-07 57.0 71 39.4
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 9.2e-07 57.0 71 39.4
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 9.2e-07 57.0 71 39.4
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 1.2e-06 56.6 71 40.8
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 1.6e-06 56.2 67 43.3
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 2.0e-06 55.8 71 39.4
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 2.0e-06 55.8 71 40.8
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 2.0e-06 55.8 71 40.8
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 2.7e-06 55.5 67 40.3
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 2.7e-06 55.5 70 38.6
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 3.5e-06 55.1 70 40.0
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 3.5e-06 55.1 67 40.3
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 3.5e-06 55.1 67 40.3
SalBow5G2315 Salvia bowleyana HOM05D001286 ORTHO05D000440 3.5e-06 55.1 65 41.5
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 3.5e-06 55.1 65 36.9
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 3.5e-06 55.1 71 38.0
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 4.5e-06 54.7 72 38.9
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 4.5e-06 54.7 72 40.3
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 4.5e-06 54.7 72 38.9
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 4.5e-06 54.7 70 40.0
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 4.5e-06 54.7 70 40.0
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 5.9e-06 54.3 71 38.0
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 5.9e-06 54.3 65 36.9
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 5.9e-06 54.3 65 36.9
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 5.9e-06 54.3 67 40.3
Carub.0005s2324 Capsella rubella HOM05D001286 ORTHO05D000440 7.8e-06 53.9 59 44.1
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 7.8e-06 53.9 67 38.8
Medtr7g104785 Medicago truncatula HOM05D001286 ORTHO05D000440 7.8e-06 53.9 71 42.3
SalBow5G5642 Salvia bowleyana HOM05D001286 ORTHO05D000440 7.8e-06 53.9 60 45.0


User provided reference genes

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