Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 2.2e-111 405.6 201 100.0
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 2.2e-111 405.6 201 100.0
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 2.2e-111 405.6 201 100.0
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 8.4e-111 403.7 201 99.5
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 2.4e-105 385.6 204 95.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 2.4e-105 385.6 204 95.6
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 8.5e-103 377.1 203 95.1
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.5e-102 374.4 206 92.2
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 7.2e-102 374.0 201 94.5
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 2.7e-101 372.1 201 94.0
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 5.7e-99 364.4 201 92.0
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 2.2e-98 362.5 201 89.1
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.9e-97 357.5 206 90.8
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 1.0e-95 353.6 204 87.7
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.2e-80 303.5 204 76.0
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 6.1e-77 291.2 186 78.5
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.9e-71 272.3 201 72.1
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 5.0e-71 271.6 203 72.9
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 6.5e-71 271.2 201 71.1
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 1.1e-70 270.4 201 71.6
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.5e-70 269.2 206 68.9
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.2e-70 268.5 201 72.1
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.2e-70 268.5 201 72.1
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.2e-70 268.5 201 72.1
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.6e-69 266.5 204 70.1
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.1e-69 266.2 203 70.4
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 3.6e-69 265.4 202 71.8
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 3.6e-69 265.4 202 70.3
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 8.0e-69 264.2 205 70.2
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.0e-69 264.2 201 70.1
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 8.0e-69 264.2 205 70.2
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.4e-68 263.5 202 70.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 2.3e-68 262.7 204 71.6
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 2.3e-68 262.7 186 72.6
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 3.0e-68 262.3 202 70.3
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 4.0e-68 261.9 208 68.8
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 4.0e-68 261.9 201 69.2
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 5.2e-68 261.5 201 69.2
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 6.8e-68 261.2 201 69.7
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.8e-68 261.2 201 69.7
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.8e-68 261.2 201 69.7
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 8.8e-68 260.8 203 70.0
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 1.5e-67 260.0 190 72.1
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.5e-67 260.0 208 68.3
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.5e-67 260.0 201 68.2
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 1.5e-67 260.0 201 68.7
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.0e-67 259.6 201 69.7
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 3.4e-67 258.8 201 68.7
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 3.4e-67 258.8 205 67.8
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 3.4e-67 258.8 201 69.7
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 5.7e-67 258.1 202 68.3
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 7.5e-67 257.7 202 68.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 9.8e-67 257.3 199 70.4
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 1.3e-66 256.9 200 71.5
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 1.3e-66 256.9 201 68.7
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.3e-66 256.9 193 69.9
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.7e-66 256.5 201 67.2
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 2.2e-66 256.1 204 68.1
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.2e-66 256.1 209 66.0
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 2.2e-66 256.1 202 68.3
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 2.8e-66 255.8 201 68.7
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 2.8e-66 255.8 201 69.7
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 4.8e-66 255.0 204 67.2
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 6.3e-66 254.6 202 66.8
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 6.3e-66 254.6 193 69.4
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 8.3e-66 254.2 207 67.1
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 1.1e-65 253.8 201 68.7
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 4.1e-65 251.9 203 66.5
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 4.1e-65 251.9 201 68.2
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 4.1e-65 251.9 204 65.2
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 5.4e-65 251.5 201 66.7
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.1e-65 250.8 205 67.3
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.1e-65 250.8 205 67.3
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.1e-65 250.8 205 67.3
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.2e-64 250.4 186 69.9
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.0e-64 249.6 192 68.2
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 7.7e-64 247.7 186 68.8
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.0e-63 247.3 202 65.8
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.9e-63 245.7 201 64.7
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 3.8e-63 245.4 203 67.0
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 3.8e-63 245.4 203 67.0
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 5.0e-63 245.0 201 65.2
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 6.6e-63 244.6 201 65.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.6e-63 244.2 201 66.2
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 2.5e-62 242.7 186 69.4
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 5.5e-62 241.5 178 70.2
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.6e-61 240.0 201 66.7
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.3e-60 236.1 187 63.6
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 2.3e-60 236.1 187 63.6
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 1.2e-59 233.8 195 63.6
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 4.4e-59 231.9 203 64.5
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 5.7e-59 231.5 149 77.2
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.7e-58 229.9 205 64.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 4.9e-58 228.4 184 65.2
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.1e-57 227.3 189 62.4
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 2.3e-52 209.5 174 67.8
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.5e-51 206.8 186 59.1
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 8.3e-50 201.1 154 68.8
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 7.8e-48 194.5 162 65.4
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 7.8e-48 194.5 176 61.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 2.9e-42 176.0 187 51.3
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.3e-39 167.2 186 50.0
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.3e-39 166.4 184 46.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 6.2e-37 158.3 199 44.7
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.7e-34 149.1 185 48.6
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 6.0e-32 141.7 117 61.5
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 7.8e-32 141.4 117 61.5
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 2.3e-31 139.8 108 67.6
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 3.3e-30 136.0 133 53.4
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.6e-27 126.3 184 43.5
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.6e-21 105.9 131 47.3
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 3.0e-15 86.3 63 68.3
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 1.9e-14 83.6 56 76.8
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 6.4e-10 68.6 46 71.7
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.4e-10 68.6 47 70.2


User provided reference genes

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