Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12221 Brassica carinata HOM05D003657 ORTHO05D004286 1.7e-57 225.7 110 100.0
BolC4t22251H Brassica oleracea HOM05D003657 ORTHO05D004286 3.0e-25 118.6 76 78.9
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 5.1e-25 117.9 90 67.8
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 1.1e-24 116.7 104 63.5
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 1.2e-23 113.2 74 74.3
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 3.6e-23 111.7 74 74.3
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 6.2e-23 110.9 74 73.0
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 6.2e-23 110.9 74 73.0
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 8.1e-23 110.5 74 73.0
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 1.8e-22 109.4 74 71.6
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 2.4e-22 109.0 75 70.7
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 5.2e-22 107.8 74 71.6
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 5.2e-22 107.8 74 73.0
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 6.8e-22 107.5 74 70.3
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 8.9e-22 107.1 74 70.3
C07p26440 Brassica napus HOM05D003657 ORTHO05D004286 2.0e-21 105.9 69 76.8
BcaC03g17300 Brassica carinata HOM05D003657 ORTHO05D004286 2.6e-21 105.5 69 75.4
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 2.4e-19 99.0 74 63.5
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 2.4e-19 99.0 74 63.5
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 5.4e-19 97.8 56 83.9
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 5.4e-19 97.8 90 53.3
BolC5t29306H Brassica oleracea HOM05D003657 ORTHO05D004286 5.4e-19 97.8 90 53.3
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 9.2e-19 97.1 75 64.0
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 3.5e-18 95.1 74 62.2
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 3.5e-18 95.1 75 58.7
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 6.0e-18 94.4 74 56.8
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 6.0e-18 94.4 74 62.2
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 7.8e-18 94.0 73 61.6
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 7.8e-18 94.0 71 63.4
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 1.0e-17 93.6 74 59.5
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.3e-17 93.2 74 58.1
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 3.9e-17 91.7 74 60.8
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 3.9e-17 91.7 73 57.5
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 6.6e-17 90.9 74 60.8
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 8.7e-17 90.5 75 57.3
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 1.1e-16 90.1 72 61.1
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.5e-16 89.7 74 56.8
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 1.9e-16 89.4 74 55.4
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 1.9e-16 89.4 74 56.8
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 2.5e-16 89.0 73 57.5
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 2.5e-16 89.0 73 57.5
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 3.3e-16 88.6 76 59.2
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 4.3e-16 88.2 73 57.5
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 4.3e-16 88.2 73 54.8
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 9.6e-16 87.0 56 71.4
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 9.6e-16 87.0 72 55.6
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 1.2e-15 86.7 70 60.0
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 2.1e-15 85.9 64 60.9
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 2.8e-15 85.5 91 47.3
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 4.7e-15 84.7 74 55.4
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 4.7e-15 84.7 67 59.7
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.2e-15 84.3 73 56.2
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 6.2e-15 84.3 73 56.2
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 6.2e-15 84.3 56 66.1
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 6.2e-15 84.3 74 52.7
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 6.2e-15 84.3 74 55.4
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 8.1e-15 84.0 64 62.5
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 8.1e-15 84.0 74 56.8
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 1.1e-14 83.6 91 49.5
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 1.1e-14 83.6 74 54.1
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 1.4e-14 83.2 74 55.4
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.4e-14 83.2 74 50.0
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 1.4e-14 83.2 66 57.6
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 1.4e-14 83.2 72 58.3
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.8e-14 82.8 56 69.6
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 1.8e-14 82.8 74 54.1
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 1.8e-14 82.8 56 64.3
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 1.8e-14 82.8 75 54.7
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 2.4e-14 82.4 74 54.1
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 2.4e-14 82.4 56 64.3
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.1e-14 82.0 73 54.8
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 3.1e-14 82.0 74 52.7
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 3.1e-14 82.0 74 54.1
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 4.0e-14 81.6 64 59.4
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 4.0e-14 81.6 57 64.9
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 4.0e-14 81.6 72 55.6
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 4.0e-14 81.6 73 52.1
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 4.0e-14 81.6 64 59.4
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.2e-14 81.3 73 54.8
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 5.2e-14 81.3 56 64.3
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 5.2e-14 81.3 56 67.9
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 5.2e-14 81.3 92 45.7
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 5.2e-14 81.3 76 48.7
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 5.2e-14 81.3 66 56.1
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 6.9e-14 80.9 56 67.9
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 6.9e-14 80.9 74 52.7
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 9.0e-14 80.5 63 58.7
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 9.0e-14 80.5 56 64.3
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.2e-13 80.1 62 59.7
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 1.5e-13 79.7 76 50.0
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 1.5e-13 79.7 72 51.4
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 2.0e-13 79.3 74 51.4
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 2.0e-13 79.3 56 64.3
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 2.0e-13 79.3 64 57.8
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 2.0e-13 79.3 72 50.0
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 2.6e-13 79.0 76 50.0
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 2.6e-13 79.0 86 47.7
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 2.6e-13 79.0 56 66.1
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 2.6e-13 79.0 64 53.1
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 2.6e-13 79.0 63 58.7
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 2.6e-13 79.0 54 66.7
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 3.4e-13 78.6 86 47.7
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 3.4e-13 78.6 86 47.7
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 3.4e-13 78.6 86 47.7
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 3.4e-13 78.6 62 54.8
RcHm_v2.0_Chr2g0157131 Rosa chinensis HOM05D003657 ORTHO05D004286 4.4e-13 78.2 66 54.5
Ca_30683_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 7.6e-13 77.4 71 52.1
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 9.9e-13 77.0 74 47.3
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 9.9e-13 77.0 86 41.9
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 9.9e-13 77.0 72 48.6
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 9.9e-13 77.0 64 57.8
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.3e-12 76.6 84 47.6
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 1.3e-12 76.6 86 40.7
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 1.7e-12 76.3 84 47.6
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 1.7e-12 76.3 56 58.9
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 1.7e-12 76.3 56 60.7
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 2.2e-12 75.9 56 57.1
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 2.2e-12 75.9 64 56.2
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 2.9e-12 75.5 64 51.6
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 3.8e-12 75.1 72 47.2
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 3.8e-12 75.1 86 46.5
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 4.9e-12 74.7 57 63.2
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 6.4e-12 74.3 56 58.9
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 6.4e-12 74.3 86 44.2
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 8.4e-12 73.9 76 44.7
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 1.4e-11 73.2 102 39.2
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 1.4e-11 73.2 70 48.6
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 1.4e-11 73.2 62 53.2
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 2.4e-11 72.4 72 47.2
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 2.4e-11 72.4 57 59.6
SEGI_37644 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 2.4e-11 72.4 89 38.2
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 3.2e-11 72.0 56 58.9
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 3.2e-11 72.0 57 59.6
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 4.2e-11 71.6 91 37.4
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 7.1e-11 70.9 64 51.6
Psat5g159760 Pisum sativum HOM05D003657 ORTHO05D004286 7.1e-11 70.9 56 58.9
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 9.3e-11 70.5 86 44.2
MSTRG.22974 Avicennia marina HOM05D003657 ORTHO05D004286 2.3e-09 65.9 62 48.4
Lsat_1_v5_gn_7_93181 Lactuca sativa HOM05D003657 ORTHO05D004286 8.7e-09 63.9 39 66.7
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 1.5e-08 63.2 64 46.9
Hma1.2p1_0342F.1_g130630 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 1.9e-08 62.8 47 59.6
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 4.3e-08 61.6 64 45.3
BcaC06g34613 Brassica carinata HOM05D003657 ORTHO05D004286 5.6e-08 61.2 75 50.7
VMungo0464G1762 Vigna mungo HOM05D000001 ORTHO05D001247 9.6e-08 60.5 116 37.1
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.3e-07 60.1 72 50.0
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 4.8e-07 58.2 56 46.4
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 8.1e-07 57.4 74 37.8
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 1.1e-06 57.0 74 37.8
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 1.8e-06 56.2 64 43.8
CARHR217910 Cardamine hirsuta HOM05D003657 ORTHO05D004286 1.8e-06 56.2 54 51.9
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 2.4e-06 55.8 72 47.2
BolC8t49013H Brassica oleracea HOM05D003657 ORTHO05D004286 4.0e-06 55.1 42 61.9
CARHR035590 Cardamine hirsuta HOM05D003657 ORTHO05D004286 4.0e-06 55.1 50 56.0
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 4.0e-06 55.1 58 39.7


User provided reference genes

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