Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 1.3e-162 576.2 276 100.0
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 3.2e-161 571.6 277 99.6
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 4.1e-156 554.7 277 96.8
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 1.4e-151 539.7 277 93.5
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 1.1e-145 520.0 251 99.6
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 1.8e-140 502.7 275 86.2
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 9.1e-140 500.4 276 85.9
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 1.3e-138 496.5 275 83.3
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 8.5e-138 493.8 267 89.5
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 4.0e-135 485.0 275 80.7
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 7.7e-131 470.7 275 79.6
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 6.3e-117 424.5 265 74.0
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 2.3e-103 379.4 211 82.5
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 5.8e-102 374.8 217 80.2
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 1.4e-92 343.6 268 58.6
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 1.4e-92 343.6 271 58.3
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 1.9e-92 343.2 271 57.6
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 4.1e-92 342.0 272 57.7
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 9.2e-92 340.9 270 58.5
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 9.2e-92 340.9 275 58.5
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 2.1e-91 339.7 272 57.4
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 2.7e-91 339.3 266 56.4
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 2.7e-91 339.3 268 58.2
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 2.7e-91 339.3 268 58.2
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 1.0e-90 337.4 268 59.7
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 1.3e-90 337.0 271 58.7
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 1.7e-90 336.7 276 55.4
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 3.9e-90 335.5 268 57.8
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 5.1e-90 335.1 266 57.5
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 8.6e-90 334.3 271 55.7
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 8.6e-90 334.3 263 57.0
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 1.1e-89 334.0 273 56.4
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 1.1e-89 334.0 268 56.7
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 2.5e-89 332.8 266 57.1
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 7.3e-89 331.3 254 58.7
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 1.2e-88 330.5 249 58.6
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 4.7e-88 328.6 270 57.8
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 1.1e-87 327.4 270 57.0
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 1.1e-87 327.4 267 55.8
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 1.4e-87 327.0 266 54.5
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 1.8e-87 326.6 254 57.5
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 4.0e-87 325.5 270 57.0
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 8.9e-87 324.3 272 55.1
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 2.0e-86 323.2 254 56.3
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 2.0e-86 323.2 250 56.8
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 4.4e-86 322.0 273 54.9
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 7.6e-86 321.2 272 56.6
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 1.3e-85 320.5 254 55.9
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 1.3e-85 320.5 274 56.2
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 2.9e-85 319.3 271 53.1
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 4.9e-85 318.5 254 58.7
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 8.4e-85 317.8 250 56.8
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 4.1e-84 315.5 267 54.3
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 7.1e-84 314.7 271 54.2
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 9.2e-84 314.3 261 54.8
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 9.2e-84 314.3 250 56.4
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 9.2e-84 314.3 265 53.2
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 4.6e-83 312.0 250 55.6
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 6.0e-83 311.6 250 54.4
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 1.0e-82 310.8 271 56.1
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.3e-82 309.7 265 55.1
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 5.1e-82 308.5 294 52.4
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 8.7e-82 307.8 309 49.5
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 8.7e-82 307.8 309 49.5
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 8.7e-82 307.8 328 48.5
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 3.3e-81 305.8 231 58.9
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 2.1e-80 303.1 278 51.1
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 6.2e-80 301.6 265 54.7
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 8.1e-80 301.2 248 54.0
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 1.1e-79 300.8 328 44.8
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 1.8e-79 300.1 244 55.3
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 4.0e-79 298.9 298 49.7
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 5.2e-79 298.5 263 53.6
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 7.6e-78 294.7 254 52.0
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 4.9e-77 292.0 332 44.3
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 1.4e-76 290.4 269 49.4
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 1.9e-76 290.0 235 54.5
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 9.3e-76 287.7 299 47.2
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 1.7e-74 283.5 219 60.3
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 3.9e-74 282.3 211 58.3
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 9.6e-73 277.7 254 52.4
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 2.1e-72 276.6 201 62.2
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 3.6e-72 275.8 200 62.5
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 3.6e-72 275.8 249 50.6
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.8e-71 273.5 261 51.3
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 6.9e-71 271.6 204 59.8
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 9.0e-71 271.2 238 54.6
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 3.4e-70 269.2 248 51.6
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 7.6e-70 268.1 205 60.0
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 3.8e-69 265.8 200 59.0
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 3.8e-69 265.8 200 59.0
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 1.2e-67 260.8 200 59.0
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 1.2e-67 260.8 268 48.1
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 7.9e-67 258.1 279 45.9
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 2.3e-66 256.5 191 59.2
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 6.7e-66 255.0 205 55.6
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 1.3e-64 250.8 264 49.2
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 2.9e-61 239.6 201 53.7
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 9.3e-60 234.6 330 39.4
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 3.3e-57 226.1 200 55.0
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 3.3e-57 226.1 289 40.1
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 7.4e-57 224.9 187 53.5
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 5.8e-54 215.3 251 41.8
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 1.2e-51 207.6 261 40.2
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 1.0e-50 204.5 183 50.8
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 1.3e-50 204.1 348 33.9
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 2.3e-50 203.4 225 45.8
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 1.9e-49 200.3 187 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 5.9e-38 162.2 174 42.0
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 1.7e-37 160.6 173 48.6
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 5.5e-36 155.6 182 41.8
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 1.4e-34 151.0 130 50.8
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 9.4e-28 128.3 124 51.6
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 5.3e-23 112.5 152 40.1
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 5.5e-20 102.4 92 52.2
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 3.6e-19 99.8 160 36.9
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 1.4e-15 87.8 80 48.8
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 5.3e-15 85.9 248 26.6
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 1.5e-09 67.8 53 56.6
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.3e-08 64.7 78 43.6


User provided reference genes

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