Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 1.7e-128 463.0 283 100.0
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 1.7e-128 463.0 283 100.0
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 4.1e-119 431.8 288 89.6
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-83 313.5 199 76.4
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 3.7e-80 302.4 294 60.2
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 3.7e-80 302.4 294 66.3
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.2e-67 260.8 290 54.8
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.6e-67 260.4 290 56.2
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 3.4e-65 252.7 312 55.4
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 4.4e-65 252.3 312 56.4
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 4.4e-65 252.3 312 56.4
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.2e-63 246.1 294 53.4
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.6e-62 243.8 294 53.1
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.3e-61 240.7 292 51.4
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 5.6e-60 235.3 298 49.3
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 5.6e-60 235.3 298 49.3
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 8.4e-48 194.9 170 56.5
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 9.3e-31 138.3 154 50.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 9.6e-28 128.3 173 42.8
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-27 127.5 173 42.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.1e-27 127.1 173 42.8
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 8.2e-27 125.2 173 42.2
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 5.3e-26 122.5 171 44.4
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 6.5e-24 115.5 178 37.1
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 7.1e-23 112.1 171 37.4
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 4.6e-22 109.4 170 39.4
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.3e-21 107.8 175 36.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-21 107.8 173 39.3
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.8e-21 107.5 179 39.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.8e-21 107.5 179 39.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 3.0e-21 106.7 178 39.9
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 5.1e-21 105.9 173 37.0
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 5.1e-21 105.9 173 37.0
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 5.1e-21 105.9 173 37.0
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 6.7e-21 105.5 165 41.2
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-20 104.0 203 35.0
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.5e-20 103.6 178 39.3
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 3.3e-20 103.2 185 38.9
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 3.3e-20 103.2 185 38.9
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 4.3e-20 102.8 179 39.1
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-19 101.3 174 39.7
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 1.3e-19 101.3 161 41.0
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-19 100.9 171 38.6
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.7e-19 99.8 172 37.8
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 2.4e-18 97.1 73 68.5
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-18 96.3 168 39.3
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 9.0e-18 95.1 120 47.5
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.2e-17 94.7 137 40.1
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.9e-17 92.4 165 37.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.9e-17 92.4 169 38.5
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 7.7e-17 92.0 175 34.9
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 9.4e-15 85.1 145 33.1
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.4e-15 85.1 182 35.7
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-14 83.6 184 38.0
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-14 83.6 179 36.9
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-14 83.6 162 37.0
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.0e-13 81.6 191 32.5
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-13 80.5 179 35.2
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-13 79.3 181 34.8
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-13 79.3 158 34.8
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-12 78.2 154 35.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-12 76.6 201 31.8
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-12 76.6 151 35.1
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.3e-12 76.3 171 35.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 4.3e-12 76.3 154 35.1
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.4e-12 75.5 163 34.4
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.7e-12 75.1 184 31.0
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.3e-11 74.7 148 37.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.7e-11 74.3 197 28.4
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 2.2e-11 73.9 156 32.7
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.8e-11 73.6 156 33.3
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-11 73.2 181 33.7
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.8e-11 72.8 149 34.9
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.2e-11 72.0 177 32.8
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 8.2e-11 72.0 132 37.1
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.1e-10 71.6 151 29.8
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 1.1e-10 71.6 132 35.6
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.1e-10 71.6 149 34.9
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.4e-10 70.5 151 29.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 6.9e-10 68.9 137 33.6
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.9e-10 68.9 151 29.8
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.9e-10 68.9 183 31.1
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 9.1e-10 68.6 147 29.3
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-09 68.2 158 32.9
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.2e-09 68.2 156 31.4
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.2e-09 68.2 156 31.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 2.0e-09 67.4 171 32.7
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-09 67.4 156 31.4
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.6e-09 67.0 163 32.5
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.4e-09 66.6 158 32.9
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 3.4e-09 66.6 147 29.3
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 4.5e-09 66.2 97 42.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 4.5e-09 66.2 141 31.2
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 7.7e-09 65.5 206 27.2
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 7.7e-09 65.5 176 29.5
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.0e-08 65.1 144 31.9
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-08 64.7 164 29.3
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.7e-08 64.3 136 33.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-08 64.3 197 27.9
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.2e-08 63.9 151 28.5
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-08 63.5 159 32.1
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.0e-08 62.8 162 31.5
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 6.5e-08 62.4 137 29.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 6.5e-08 62.4 148 31.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 8.5e-08 62.0 164 31.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 8.5e-08 62.0 123 32.5
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 8.5e-08 62.0 156 29.5
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.4e-07 61.2 145 31.0
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.4e-07 61.2 160 33.1
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.9e-07 60.8 156 28.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.9e-07 60.8 157 29.3
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 2.5e-07 60.5 156 29.5
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-07 60.1 182 30.8
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 3.2e-07 60.1 146 30.1
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 4.2e-07 59.7 132 31.8
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.5e-07 59.3 142 31.0
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 7.2e-07 58.9 176 27.8
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 7.2e-07 58.9 156 29.5
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.2e-06 58.2 128 30.5
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.2e-06 58.2 133 33.1
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.1e-06 57.4 143 31.5
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.7e-06 57.0 123 34.1
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 2.7e-06 57.0 136 29.4
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.6e-06 56.6 140 30.7
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.7e-06 56.2 162 30.2
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 6.1e-06 55.8 139 29.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 7.9e-06 55.5 139 30.9


User provided reference genes

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