Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 2.5e-86 322.0 158 100.0
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 6.3e-69 264.2 206 71.4
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.6e-64 249.6 161 82.6
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.4e-60 235.7 123 90.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.1e-60 235.0 139 81.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 5.3e-60 234.6 119 92.4
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 9.1e-60 233.8 123 89.4
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 9.1e-60 233.8 123 89.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 1.2e-59 233.4 148 78.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 7.7e-59 230.7 139 79.9
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 7.7e-59 230.7 148 77.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.3e-58 229.9 139 79.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.2e-58 229.2 148 77.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.9e-58 228.8 146 76.7
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.9e-58 228.8 139 79.9
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 8.5e-58 227.3 148 75.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.1e-57 226.9 146 76.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.2e-57 225.3 148 75.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 5.7e-54 214.5 144 75.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.2e-53 210.7 119 82.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.4e-52 209.1 148 70.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.9e-51 204.5 114 79.8
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.8e-50 201.8 122 74.6
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 6.5e-50 201.1 124 75.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-49 199.9 124 75.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.5e-49 199.9 124 75.0
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.9e-49 199.5 119 76.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.2e-49 198.7 113 79.6
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 7.2e-49 197.6 124 72.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.4e-49 197.2 114 78.1
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.6e-48 196.4 114 78.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.7e-48 194.9 124 71.0
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 8.0e-48 194.1 128 72.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.0e-47 193.7 145 63.4
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.0e-47 193.7 117 74.4
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.4e-47 193.4 114 75.4
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.4e-47 193.4 124 71.8
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.4e-47 193.4 124 72.6
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.4e-47 193.4 124 72.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.4e-47 193.4 116 74.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.3e-47 192.6 114 76.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.0e-47 192.2 114 75.4
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.0e-47 192.2 114 75.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 4.0e-47 191.8 122 69.7
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 4.0e-47 191.8 114 77.2
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.0e-47 191.8 109 78.0
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 5.2e-47 191.4 114 76.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 5.2e-47 191.4 114 77.2
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.2e-47 191.4 109 78.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.5e-46 189.9 140 65.7
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.5e-46 189.9 124 71.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.0e-46 189.5 140 65.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.0e-46 189.5 116 73.3
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.6e-46 189.1 119 71.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.6e-46 189.1 114 73.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.4e-46 188.3 113 73.5
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.4e-46 188.3 108 78.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 5.7e-46 188.0 113 73.5
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 7.5e-46 187.6 114 73.7
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 9.8e-46 187.2 114 72.8
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 9.8e-46 187.2 140 65.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 9.8e-46 187.2 114 74.6
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-45 186.8 124 68.5
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.3e-45 186.8 114 72.8
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.2e-45 186.0 114 73.7
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 2.2e-45 186.0 140 65.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.8e-45 184.9 122 68.0
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.3e-45 184.5 108 75.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.1e-44 183.7 114 71.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.4e-44 183.3 121 70.2
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.1e-44 182.2 111 73.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.1e-44 182.2 109 72.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.1e-44 181.8 121 69.4
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 7.0e-44 181.0 133 63.9
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.0e-44 181.0 114 71.1
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.2e-43 180.3 109 74.3
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.6e-43 179.9 109 74.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.0e-43 179.5 109 72.5
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.7e-43 179.1 119 67.2
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 3.5e-43 178.7 118 67.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.5e-43 178.3 114 70.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 4.5e-43 178.3 119 67.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 7.7e-43 177.6 109 71.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-42 176.8 109 71.6
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.7e-42 176.4 142 60.6
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.9e-42 175.6 130 63.8
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 5.0e-42 174.9 118 66.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 6.5e-42 174.5 129 63.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 6.5e-42 174.5 122 64.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.1e-41 173.7 119 65.5
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.9e-41 172.9 116 65.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.9e-41 172.9 114 67.5
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.9e-41 172.9 109 69.7
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.5e-41 172.6 110 71.8
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.5e-41 172.6 109 70.6
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.2e-41 172.2 111 67.6
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 4.2e-41 171.8 143 58.0
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 4.2e-41 171.8 118 66.9
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.2e-41 171.8 109 70.6
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 5.5e-41 171.4 115 64.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.2e-41 171.0 109 70.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 7.2e-41 171.0 114 67.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 9.5e-41 170.6 108 70.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.2e-40 170.2 109 67.9
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.6e-40 169.9 124 64.5
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.6e-40 169.9 119 65.5
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 3.6e-40 168.7 117 61.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.5e-38 163.3 106 67.9
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.5e-38 163.3 111 67.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 3.4e-38 162.2 102 73.5
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.7e-37 159.8 88 84.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-36 157.1 101 68.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.4e-36 156.8 137 56.2
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 3.1e-36 155.6 100 70.0
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.1e-36 155.6 119 55.5
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.1e-36 155.2 118 56.8
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.6e-35 153.3 119 54.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.5e-33 146.0 87 75.9
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 4.3e-33 145.2 85 75.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.1e-32 142.9 87 77.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-32 141.7 94 70.2
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.1e-32 141.4 88 72.7
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.1e-32 141.4 88 72.7
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 8.0e-32 141.0 82 76.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.0e-32 141.0 94 70.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.8e-31 139.8 104 65.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 5.2e-31 138.3 82 75.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 6.8e-31 137.9 88 67.0
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 5.7e-30 134.8 88 68.2
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.2e-29 132.9 85 70.6
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.2e-29 132.9 82 73.2
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.9e-29 132.5 85 69.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.9e-29 132.5 212 37.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.9e-29 131.7 83 73.5
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.9e-29 131.7 83 73.5
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.2e-28 129.0 83 71.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 9.2e-28 127.5 82 70.7
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-27 127.1 82 69.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.5e-27 125.6 82 70.7
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 3.5e-27 125.6 86 65.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 5.9e-27 124.8 102 59.8
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.7e-26 123.2 79 69.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.9e-26 122.1 88 67.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 8.6e-26 120.9 119 42.9
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.5e-25 119.4 128 49.2
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.3e-25 118.6 120 46.7
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 4.6e-19 98.6 124 37.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.0e-18 97.4 74 64.9
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.9e-18 95.5 72 58.3
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.5e-17 92.8 124 36.3
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 8.1e-16 87.8 58 65.5
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 8.1e-16 87.8 56 69.6
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.5e-14 83.6 119 35.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.0e-14 83.2 51 70.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 3.5e-11 72.4 49 71.4
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.6e-10 67.8 51 64.7
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 4.7e-08 62.0 45 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 3.1e-07 59.3 43 60.5


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