Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 3.1e-38 161.4 86 100.0
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 3.1e-38 161.4 86 100.0
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 7.0e-38 160.2 86 98.8
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 3.5e-37 157.9 86 97.7
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 4.5e-37 157.5 86 97.7
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 3.2e-35 151.4 86 96.5
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 3.0e-33 144.8 86 93.0
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 9.7e-32 139.8 86 90.7
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 6.3e-31 137.1 86 89.5
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.8e-30 135.6 86 83.7
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 7.0e-30 133.7 86 84.9
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.2e-29 132.9 86 83.7
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 2.9e-28 128.3 84 82.1
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.5e-27 125.2 71 93.0
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.2e-27 124.8 86 84.9
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.6e-26 122.5 71 88.7
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.8e-25 119.0 71 84.5
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 4.8e-23 110.9 71 81.7
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.8e-17 92.4 71 67.6
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 6.8e-17 90.5 81 64.2
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.4e-16 88.2 81 60.5
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 1.7e-15 85.9 79 58.2
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 1.1e-14 83.2 69 62.3
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 2.4e-14 82.0 82 54.9
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 3.1e-14 81.6 74 55.4
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 3.1e-14 81.6 79 58.2
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-14 81.6 79 58.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 5.4e-14 80.9 73 57.5
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 2.7e-13 78.6 66 60.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 3.5e-13 78.2 82 52.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 5.9e-13 77.4 73 54.8
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 5.9e-13 77.4 81 55.6
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.9e-13 77.4 87 55.2
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.0e-12 76.6 92 50.0
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.0e-12 76.6 87 51.7
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 1.3e-12 76.3 81 53.1
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.7e-12 75.9 73 54.8
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 1.7e-12 75.9 71 54.9
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.7e-12 75.9 73 58.9
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.7e-12 75.9 79 51.9
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 2.9e-12 75.1 71 57.7
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 2.9e-12 75.1 70 54.3
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 3.8e-12 74.7 71 54.9
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 3.8e-12 74.7 88 52.3
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 3.8e-12 74.7 82 53.7
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 3.8e-12 74.7 68 57.4
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 5.0e-12 74.3 76 56.6
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 6.6e-12 73.9 66 56.1
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 6.6e-12 73.9 78 50.0
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-11 73.2 67 58.2
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 2.5e-11 72.0 87 48.3
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 2.5e-11 72.0 69 55.1
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.3e-11 71.6 67 56.7
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 4.2e-11 71.2 67 58.2
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 5.5e-11 70.9 74 55.4
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 7.2e-11 70.5 83 44.6
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.6e-10 69.3 73 50.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 1.6e-10 69.3 78 51.3
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.1e-10 68.9 91 48.4
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.1e-10 68.9 83 45.8
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.8e-10 68.6 111 41.4
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.8e-10 68.6 111 41.4
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 4.7e-10 67.8 67 56.7
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.1e-10 67.4 83 44.6
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.1e-10 67.4 83 44.6
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 6.1e-10 67.4 80 47.5
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 8.0e-10 67.0 71 50.7
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 8.0e-10 67.0 65 55.4
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.8e-09 65.9 71 47.9
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 5.2e-09 64.3 46 78.3
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.2e-08 63.2 74 51.4
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.5e-08 62.8 77 44.2
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 2.0e-08 62.4 72 45.8
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 2.6e-08 62.0 67 49.3
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 2.6e-08 62.0 76 43.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 7.5e-08 60.5 73 45.2
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 1.3e-07 59.7 72 44.4
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 2.8e-07 58.5 44 63.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.8e-07 58.5 70 44.3
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 2.8e-07 58.5 63 49.2
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 5.4e-06 54.3 66 43.9
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 5.4e-06 54.3 70 44.3


User provided reference genes

Program Settings