Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11996 Brassica carinata HOM05D013509 ORTHO05D016099 2.8e-177 625.2 315 100.0
BcaC07g42415 Brassica carinata HOM05D013509 ORTHO05D016099 5.5e-125 451.4 242 95.9
C08p53810 Brassica napus HOM05D013509 ORTHO05D016099 1.0e-115 420.6 222 96.8
C04p34750 Brassica napus HOM05D013509 ORTHO05D016099 1.8e-107 393.3 222 91.0
BolC4t22499H Brassica oleracea HOM05D013509 ORTHO05D016099 9.0e-43 178.3 90 95.6
C09p48380 Brassica napus HOM05D013509 ORTHO05D016099 1.3e-41 174.5 107 88.8
BolC4t27313H Brassica oleracea HOM05D013509 ORTHO05D016099 2.9e-41 173.3 90 92.2
BolC8t52895H Brassica oleracea HOM05D013509 ORTHO05D016099 3.8e-41 172.9 90 92.2
BolC4t25029H Brassica oleracea HOM05D013509 ORTHO05D016099 7.2e-40 168.7 90 90.0
BcaC03g13749 Brassica carinata HOM05D013509 ORTHO05D016099 2.7e-39 166.8 147 68.7
BolC5t32927H Brassica oleracea HOM05D013509 ORTHO05D016099 7.9e-39 165.2 88 88.6
A10p20890 Brassica napus HOM05D000404 ORTHO05D005791 1.5e-21 107.8 86 66.3
BcaB01g05257 Brassica carinata HOM05D000404 ORTHO05D005791 2.0e-21 107.5 86 65.1
C03p10500 Brassica napus HOM05D000404 ORTHO05D005791 2.0e-21 107.5 86 65.1
BolC3t13532H Brassica oleracea HOM05D000404 ORTHO05D005791 2.0e-21 107.5 86 65.1
A03p09020 Brassica napus HOM05D000404 ORTHO05D005791 3.3e-21 106.7 86 65.1
BraA10t44154Z Brassica rapa HOM05D000404 ORTHO05D005791 5.7e-21 105.9 86 65.1
BraA03t10226Z Brassica rapa HOM05D000404 ORTHO05D005791 7.4e-21 105.5 86 64.0
CARHR194330 Cardamine hirsuta HOM05D000404 ORTHO05D005791 7.4e-21 105.5 80 67.5
Sp6g25670 Schrenkiella parvula HOM05D000404 ORTHO05D005791 1.7e-20 104.4 80 67.5
BcaC04g18656 Brassica carinata HOM05D000404 ORTHO05D005791 2.8e-20 103.6 86 65.1
C09p57790 Brassica napus HOM05D000404 ORTHO05D005791 2.8e-20 103.6 86 65.1
BolC9t58648H Brassica oleracea HOM05D000404 ORTHO05D005791 2.8e-20 103.6 86 65.1
Thhalv10013215m.g Eutrema salsugineum HOM05D000404 ORTHO05D005791 3.7e-20 103.2 100 55.0
Carub.0006s1697 Capsella rubella HOM05D000404 ORTHO05D005791 8.2e-20 102.1 80 65.0
AT5G18670 Arabidopsis thaliana HOM05D000404 ORTHO05D005791 1.1e-19 101.7 80 66.2
AL6G29950 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 1.4e-19 101.3 103 53.4
THA.LOC104827120 Tarenaya hassleriana HOM05D000404 ORTHO05D005791 5.3e-19 99.4 102 53.9
Aa31LG11G10950 Aethionema arabicum HOM05D000404 ORTHO05D005791 9.1e-19 98.6 100 52.0
Ca_00575_v3 Cicer arietinum L. HOM05D000404 ORTHO05D005791 1.9e-16 90.9 83 55.4
VMungo0540G0329 Vigna mungo HOM05D000404 ORTHO05D005791 4.2e-16 89.7 83 50.6
Ciclev10004689m.g Citrus clementina HOM05D000404 ORTHO05D005791 1.6e-15 87.8 86 54.7
Medtr2g020240 Medicago truncatula HOM05D000404 ORTHO05D005791 1.6e-15 87.8 80 52.5
FAN07G0337 Fragaria x ananassa HOM05D000404 ORTHO05D005791 1.8e-14 84.3 86 51.2
Psat1g187120 Pisum sativum HOM05D000404 ORTHO05D005791 1.8e-14 84.3 85 51.8
AL3G17330 Arabidopsis lyrata HOM05D000404 ORTHO05D005791 2.3e-14 84.0 90 51.1
FAN17G2506 Fragaria x ananassa HOM05D000404 ORTHO05D005791 2.3e-14 84.0 86 52.3
LjContig00389g0014251 Lotus japonicus HOM05D000404 ORTHO05D005791 2.3e-14 84.0 117 37.6
Haze_01059 Corylus avellana HOM05D000404 ORTHO05D005791 3.0e-14 83.6 85 51.8
FvH4_4g17180 Fragaria vesca HOM05D000404 ORTHO05D005791 3.0e-14 83.6 86 51.2
FAN12G2473 Fragaria x ananassa HOM05D000404 ORTHO05D005791 3.0e-14 83.6 86 51.2
FAN12G3224 Fragaria x ananassa HOM05D000404 ORTHO05D005791 3.0e-14 83.6 86 51.2
FAN22G2151 Fragaria x ananassa HOM05D000404 ORTHO05D005791 3.0e-14 83.6 86 51.2
Hund24912 Selenicereus undatus HOM05D000404 ORTHO05D005791 5.2e-14 82.8 99 47.5
Gohir.A10G101605 Gossypium hirsutum HOM05D000404 ORTHO05D005791 6.7e-14 82.4 106 44.3
Atru.chr4.2752 Acer truncatum HOM05D000404 ORTHO05D005791 1.5e-13 81.3 86 50.0
RcHm_v2.0_Chr4g0420971 Rosa chinensis HOM05D000404 ORTHO05D005791 1.5e-13 81.3 109 43.1
Gohir.D10G166400 Gossypium hirsutum HOM05D000404 ORTHO05D005791 2.0e-13 80.9 106 43.4
Lalb_Chr20g0118131 Lupinus albus HOM05D000404 ORTHO05D005791 2.6e-13 80.5 83 45.8
Hund24913 Selenicereus undatus HOM05D000404 ORTHO05D005791 2.6e-13 80.5 99 46.5
Gorai.011G185700 Gossypium raimondii HOM05D000404 ORTHO05D005791 3.3e-13 80.1 106 43.4
PGR015G0006 Punica granatum HOM05D000404 ORTHO05D005791 3.3e-13 80.1 87 49.4
PGR104G0002 Punica granatum HOM05D000404 ORTHO05D005791 3.3e-13 80.1 87 49.4
CiPaw.01G153400 Carya illinoinensis HOM05D000404 ORTHO05D005791 4.4e-13 79.7 86 48.8
Prupe.1G142400 Prunus persica HOM05D000404 ORTHO05D005791 4.4e-13 79.7 86 47.7
QL06p007345 Quercus lobata HOM05D000404 ORTHO05D005791 4.4e-13 79.7 86 48.8
Phvul.006G161200 Phaseolus vulgaris HOM05D000404 ORTHO05D005791 5.7e-13 79.3 83 44.6
Eucgr.H03767 Eucalyptus grandis HOM05D000404 ORTHO05D005791 7.5e-13 79.0 106 43.4
Thecc.04G277400 Theobroma cacao HOM05D000404 ORTHO05D005791 7.5e-13 79.0 88 47.7
Cfa015494 Carpinus fangiana HOM05D000404 ORTHO05D005791 9.7e-13 78.6 88 47.7
COL.COLO4_13931 Corchorus olitorius HOM05D000404 ORTHO05D005791 9.7e-13 78.6 81 51.9
Glyma.13G215000 Glycine max HOM05D000404 ORTHO05D005791 9.7e-13 78.6 83 48.2
Manes.03G191000 Manihot esculenta HOM05D000404 ORTHO05D005791 9.7e-13 78.6 86 50.0
Dinv38327 Davidia involucrata HOM05D000404 ORTHO05D005791 1.3e-12 78.2 85 51.8
vmacro15257 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 1.3e-12 78.2 85 50.6
vmacro22596 Vaccinium macrocarpon HOM05D000404 ORTHO05D005791 1.3e-12 78.2 85 50.6
Cfa015495 Carpinus fangiana HOM05D000404 ORTHO05D005791 1.7e-12 77.8 85 48.2
Hma1.2p1_0823F.1_g224600 Hydrangea macrophylla HOM05D000404 ORTHO05D005791 1.7e-12 77.8 84 46.4
arahy.Tifrunner.gnm1.ann1.I36EUT Arachis hypogaea HOM05D000404 ORTHO05D005791 2.2e-12 77.4 86 47.7
Oeu062885.1 Olea europaea HOM05D000404 ORTHO05D005791 2.2e-12 77.4 83 47.0
arahy.Tifrunner.gnm1.ann1.60DV95 Arachis hypogaea HOM05D000404 ORTHO05D005791 2.8e-12 77.0 86 47.7
TWI73G0089 Tripterygium wilfordii HOM05D000404 ORTHO05D005791 2.8e-12 77.0 112 40.2
Lj6A669G30 Lonicera japonica HOM05D000404 ORTHO05D005791 3.7e-12 76.6 112 39.3
Nitab4.5_0000191g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 3.7e-12 76.6 109 39.4
Nitab4.5_0000784g0030 Nicotiana tabacum HOM05D000404 ORTHO05D005791 3.7e-12 76.6 109 39.4
Sabra08G0157500 Salix brachista HOM05D000404 ORTHO05D005791 3.7e-12 76.6 83 49.4
Cpa.g.sc16.112 Carica papaya HOM05D000404 ORTHO05D005791 4.8e-12 76.3 80 46.2
Dinv44427 Davidia involucrata HOM05D000404 ORTHO05D005791 4.8e-12 76.3 86 47.7
Duzib151G0511 Durio zibethinus HOM05D000404 ORTHO05D005791 4.8e-12 76.3 87 48.3
Lalb_Chr18g0055731 Lupinus albus HOM05D000404 ORTHO05D005791 4.8e-12 76.3 83 43.4
Potri.008G204200 Populus trichocarpa HOM05D000404 ORTHO05D005791 6.3e-12 75.9 83 49.4
DCAR_024613 Daucus carota HOM05D000404 ORTHO05D005791 8.2e-12 75.5 81 50.6
Duzib052G0769 Durio zibethinus HOM05D000404 ORTHO05D005791 8.2e-12 75.5 88 45.5
Glyma.15G098100 Glycine max HOM05D000404 ORTHO05D005791 8.2e-12 75.5 83 45.8
HanXRQChr03g0080071 Helianthus annuus HOM05D000404 ORTHO05D005791 1.1e-11 75.1 79 48.1
Lsat_1_v5_gn_5_50601 Lactuca sativa HOM05D000404 ORTHO05D005791 1.1e-11 75.1 83 47.0
Sc19g0004940 Simmondsia chinensis HOM05D000404 ORTHO05D005791 1.1e-11 75.1 86 48.8
Sc13g0003610 Simmondsia chinensis HOM05D000404 ORTHO05D005791 1.4e-11 74.7 86 47.7
CAN.G223.10 Capsicum annuum HOM05D000404 ORTHO05D005791 1.8e-11 74.3 100 44.0
Nn3g21297 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.8e-11 74.3 86 46.5
TAR365G0265 Trochodendron aralioides HOM05D000404 ORTHO05D005791 1.8e-11 74.3 112 37.5
MD16G1175300 Malus domestica HOM05D000404 ORTHO05D005791 2.4e-11 73.9 86 46.5
Oeu007862.1 Olea europaea HOM05D000404 ORTHO05D005791 2.4e-11 73.9 101 40.6
PGSC0003DMG400010664 Solanum tuberosum HOM05D000404 ORTHO05D005791 3.1e-11 73.6 101 39.6
EL10Ac3g06555 Beta vulgaris HOM05D000404 ORTHO05D005791 4.1e-11 73.2 99 42.4
MD13G1174000 Malus domestica HOM05D000404 ORTHO05D005791 4.1e-11 73.2 86 45.3
Lsat_1_v5_gn_5_50720 Lactuca sativa HOM05D000404 ORTHO05D005791 5.3e-11 72.8 83 45.8
ECA240G3803 Erigeron canadensis HOM05D000084 ORTHO05D000363 9.1e-11 72.0 84 45.2
Gohir.D02G052000 Gossypium hirsutum HOM05D000404 ORTHO05D005791 9.1e-11 72.0 129 35.7
Gorai.005G057300 Gossypium raimondii HOM05D000404 ORTHO05D005791 9.1e-11 72.0 129 35.7
Peaxi162Scf00386g00222 Petunia axillaris HOM05D000404 ORTHO05D005791 9.1e-11 72.0 101 38.6
MSTRG.10053 Avicennia marina HOM05D000404 ORTHO05D005791 1.2e-10 71.6 104 39.4
Nn4g26029 Nelumbo nucifera HOM05D000404 ORTHO05D005791 1.6e-10 71.2 108 38.9
Actinidia00051 Actinidia chinensis HOM05D000404 ORTHO05D005791 2.0e-10 70.9 84 44.0
CANSAT78G2211 Cannabis sativa HOM05D000404 ORTHO05D005791 2.0e-10 70.9 86 47.7
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 2.7e-10 70.5 99 41.4
ClCG06G005390 Citrullus lanatus HOM05D000404 ORTHO05D005791 2.7e-10 70.5 86 44.2
PSO210G4605 Papaver somniferum HOM05D000404 ORTHO05D005791 2.7e-10 70.5 86 46.5
PSO170G0635 Papaver somniferum HOM05D000404 ORTHO05D005791 3.5e-10 70.1 86 46.5
Sopen01g029610 Solanum pennellii HOM05D000404 ORTHO05D005791 3.5e-10 70.1 101 38.6
Solyc01g067660.3 Solanum lycopersicum HOM05D000404 ORTHO05D005791 4.5e-10 69.7 101 38.6
TPR.G1496 Trifolium pratense HOM05D000404 ORTHO05D005791 4.5e-10 69.7 82 40.2
unitig_32.g11750 Utricularia gibba HOM05D000404 ORTHO05D005791 4.5e-10 69.7 84 45.2
unitig_748.g8576 Utricularia gibba HOM05D000404 ORTHO05D005791 4.5e-10 69.7 97 40.2
SalBow2G2518 Salvia bowleyana HOM05D000404 ORTHO05D005791 7.7e-10 68.9 88 40.9
SalBow5G1198 Salvia bowleyana HOM05D000404 ORTHO05D005791 1.0e-09 68.6 101 38.6
SalBow5G2195 Salvia bowleyana HOM05D000404 ORTHO05D005791 1.0e-09 68.6 101 38.6
GSVIVG01017808001 Vitis vinifera HOM05D000404 ORTHO05D005791 1.0e-09 68.6 84 41.7
CDE12G0716 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 1.7e-09 67.8 109 35.8
Sed0000536 Sechium edule HOM05D000404 ORTHO05D005791 1.7e-09 67.8 86 43.0
CDE01G0466 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 2.2e-09 67.4 109 36.7
MELO3C021362.2 Cucumis melo HOM05D000404 ORTHO05D005791 3.8e-09 66.6 106 36.8
Aqoxy2G03092 Aquilegia oxysepala HOM05D000404 ORTHO05D005791 5.0e-09 66.2 99 41.4
CsaV3_6G005730 Cucumis sativus L. HOM05D000404 ORTHO05D005791 5.0e-09 66.2 106 36.8
HPP92_013694 Vanilla planifolia HOM05D000404 ORTHO05D005791 5.0e-09 66.2 104 38.5
Gohir.A02G046300 Gossypium hirsutum HOM05D000404 ORTHO05D005791 6.5e-09 65.9 86 43.0
BcaC06g34007 Brassica carinata HOM05D000404 ORTHO05D090352 1.5e-08 64.7 165 35.8
AUR62041243 Chenopodium quinoa HOM05D000404 ORTHO05D005791 1.5e-08 64.7 89 41.6
Zm00001eb394710 Zea mays HOM05D000404 ORTHO05D005791 1.5e-08 64.7 85 40.0
Os03g0351300 Oryza sativa ssp. japonica HOM05D000404 ORTHO05D005791 1.9e-08 64.3 84 41.7
Zm00001eb016880 Zea mays HOM05D000404 ORTHO05D005791 2.5e-08 63.9 97 39.2
Zm00001eb016920 Zea mays HOM05D000404 ORTHO05D005791 2.5e-08 63.9 97 39.2
MBI18_g29028_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 3.2e-08 63.5 84 39.3
BcaC01g06831 Brassica carinata HOM05D029781 ORTHO05D024482 7.2e-08 62.4 46 69.6
AUR62014139 Chenopodium quinoa HOM05D000404 ORTHO05D005791 7.2e-08 62.4 100 37.0
MBI18_g42097_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D005791 7.2e-08 62.4 84 38.1
CSS0006318 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 1.6e-07 61.2 80 45.0
CSS0040095 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D005791 1.6e-07 61.2 80 45.0
Cc03_g02380 Coffea canephora HOM05D000404 ORTHO05D005791 2.1e-07 60.8 84 39.3
BraA01t02658Z Brassica rapa HOM05D013509 ORTHO05D024482 2.7e-07 60.5 43 69.8
ATR0706G226 Amborella trichopoda HOM05D000404 ORTHO05D005791 1.0e-06 58.5 89 37.1
Oeu054289.1 Olea europaea HOM05D000404 ORTHO05D001765 1.0e-06 58.5 75 41.3
VMungo1383G0478 Vigna mungo HOM05D000404 ORTHO05D002003 1.8e-06 57.8 84 38.1
Sp2g10240 Schrenkiella parvula HOM05D000404 ORTHO05D002003 3.0e-06 57.0 95 35.8
SMO139G0111 Selaginella moellendorffii HOM05D000404 ORTHO05D001765 4.0e-06 56.6 93 35.5
CARHR176840 Cardamine hirsuta HOM05D000404 ORTHO05D002003 5.2e-06 56.2 95 36.8
CDE05G3429 Ceratophyllum demersum HOM05D000404 ORTHO05D005791 5.2e-06 56.2 85 41.2
BcaB07g30462 Brassica carinata HOM05D000404 ORTHO05D002003 6.8e-06 55.8 95 34.7
A02p29020 Brassica napus HOM05D000404 ORTHO05D002003 6.8e-06 55.8 95 34.7
Thhalv10001222m.g Eutrema salsugineum HOM05D000404 ORTHO05D002003 8.8e-06 55.5 95 34.7
Manes.05G034900 Manihot esculenta HOM05D000404 ORTHO05D002003 8.8e-06 55.5 84 36.9


User provided reference genes

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