Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 2.5e-135 485.3 231 100.0
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 9.0e-125 450.3 218 98.2
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 3.4e-124 448.4 218 97.7
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 7.6e-124 447.2 218 97.7
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 1.1e-122 443.4 218 96.8
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 4.6e-121 438.0 218 95.0
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 1.3e-118 429.9 218 92.7
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 2.0e-116 422.5 232 86.6
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 2.0e-116 422.5 217 91.2
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 5.0e-115 417.9 218 89.4
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 2.7e-113 412.1 218 90.8
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 8.2e-110 400.6 218 87.2
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 1.8e-109 399.4 217 87.1
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 3.1e-109 398.7 217 87.6
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 2.0e-108 396.0 202 96.0
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 3.9e-104 381.7 218 81.7
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 5.9e-100 367.9 225 74.2
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 2.9e-99 365.5 217 75.1
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 8.5e-99 364.0 217 74.7
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 1.1e-98 363.6 218 74.8
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 9.4e-98 360.5 221 73.3
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 3.3e-95 352.1 216 71.8
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 2.8e-94 349.0 218 71.6
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 1.8e-93 346.3 218 72.5
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 1.8e-93 346.3 217 71.4
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 1.8e-93 346.3 233 70.0
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 1.8e-93 346.3 218 71.6
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 4.1e-93 345.1 218 72.0
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 4.1e-93 345.1 217 72.4
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 5.3e-93 344.7 218 72.0
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 5.3e-93 344.7 218 70.6
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 9.1e-93 344.0 233 69.1
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 2.7e-92 342.4 218 71.1
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 2.7e-92 342.4 217 72.8
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 2.7e-92 342.4 218 73.4
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 2.7e-92 342.4 218 71.6
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 2.7e-92 342.4 218 70.2
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 4.5e-92 341.7 218 69.7
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 5.9e-92 341.3 218 69.7
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 5.9e-92 341.3 218 71.1
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 7.7e-92 340.9 218 71.1
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 1.7e-91 339.7 217 72.4
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 1.7e-91 339.7 218 70.6
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 2.9e-91 339.0 217 71.4
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 5.0e-91 338.2 218 69.7
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 1.9e-90 336.3 233 67.0
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 1.9e-90 336.3 217 70.0
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 1.9e-90 336.3 218 70.2
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 2.5e-90 335.9 218 69.3
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 2.5e-90 335.9 217 69.6
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 2.5e-90 335.9 217 69.6
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 4.2e-90 335.1 217 70.5
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 5.5e-90 334.7 217 71.4
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 7.2e-90 334.3 217 70.0
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 1.6e-89 333.2 218 69.3
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 1.6e-89 333.2 218 69.3
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 1.6e-89 333.2 218 68.3
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 2.1e-89 332.8 217 70.5
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 2.1e-89 332.8 218 70.2
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.7e-89 332.4 218 70.2
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 2.7e-89 332.4 218 70.2
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 2.7e-89 332.4 218 70.2
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 2.7e-89 332.4 218 69.7
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 4.7e-89 331.6 218 70.2
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 4.7e-89 331.6 218 70.2
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 4.7e-89 331.6 218 70.2
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.8e-88 329.7 218 69.7
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.3e-88 329.3 218 69.3
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 2.3e-88 329.3 217 69.6
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 4.0e-88 328.6 225 68.0
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 8.8e-88 327.4 217 70.0
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 1.5e-87 326.6 218 68.8
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 1.5e-87 326.6 218 68.3
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 2.0e-87 326.2 218 67.4
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 2.6e-87 325.9 217 68.7
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 3.4e-87 325.5 218 68.3
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 9.8e-87 323.9 217 69.1
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 9.8e-87 323.9 218 68.3
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 2.8e-86 322.4 218 68.8
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 3.7e-86 322.0 229 64.6
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 1.1e-85 320.5 217 66.8
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 2.7e-84 315.8 217 67.3
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 4.5e-84 315.1 215 68.4
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 5.9e-84 314.7 241 63.1
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 1.3e-83 313.5 218 66.5
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 8.6e-83 310.8 201 70.1
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 7.2e-82 307.8 215 63.7
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 2.0e-76 289.7 217 62.2
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 2.9e-75 285.8 215 60.9
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 1.2e-73 280.4 214 61.2
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 1.6e-73 280.0 193 68.4
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 1.8e-72 276.6 193 67.4
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 8.9e-72 274.2 227 59.9
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 2.9e-70 269.2 217 58.5
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 1.6e-68 263.5 217 59.0
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 3.5e-68 262.3 218 58.7
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 6.0e-68 261.5 220 60.9
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 8.6e-67 257.7 168 70.2
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 1.6e-65 253.4 225 58.2
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 1.8e-64 250.0 219 56.2
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 2.9e-62 242.7 163 68.1
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 2.1e-60 236.5 203 57.6
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 1.1e-58 230.7 170 64.7
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 6.8e-56 221.5 219 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 2.0e-55 219.9 208 51.0
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 1.1e-53 214.2 130 74.6
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.7e-51 206.8 218 46.8
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 1.9e-50 203.4 212 46.7
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 6.4e-46 188.3 210 47.1
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 3.2e-45 186.0 208 44.2
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 7.6e-31 138.3 134 54.5
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 8.4e-30 134.8 92 66.3
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 7.1e-29 131.7 82 78.0
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 1.9e-26 123.6 91 57.1
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 2.5e-26 123.2 90 62.2
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 2.8e-17 93.2 47 87.2
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 3.4e-15 86.3 47 83.0


User provided reference genes

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